CF835773

Overview
NameCF835773
Unique NameCF835773
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835773_ssr769 microsatellite CF835773_ssr769:769..789. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835773_ssr331 microsatellite CF835773_ssr331:331..345. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12387 contig Csv1_Contig12387:665..1535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF835773 vs. ExPASy Swiss-Prot
Match: CSLCC_ARATH (Probable xyloglucan glycosyltransferase 12 OS=Arabidopsis thaliana GN=CSLC12 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.893e-13
Identity = 45/87 (51.72%), Postives = 51/87 (58.62%), Query Frame = -3 
Query:  607 SKHNKGSSVPNLSEVKMETKQEKMVSXXXXXXKHNRIYMKEXXXXXXXXXXXXXXXXXAQGIHFYFLLFQGVSFLLVGLDLIGEQLD 867
            +KH +G S P   E + E K EK         KHNRIYMKE                 AQGIHFYFLLFQG+SFLLVGLDLIGEQ++
Sbjct:  619 TKHQRGVSAP---ETEAEKKAEKT---KRKKKKHNRIYMKELSLAFLLLTAATRSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQVE 699
[Close]
BLAST of CF835773 vs. ExPASy Swiss-Prot
Match: CSLC9_ORYSJ (Probable xyloglucan glycosyltransferase 9 OS=Oryza sativa subsp. japonica GN=CSLC9 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.893e-13
Identity = 42/88 (47.73%), Postives = 48/88 (54.55%), Query Frame = -3 
Query:  607 ESKHNKGSSVPNLSEVKMETKQEKMVSXXXXXXKHNRIYMKEXXXXXXXXXXXXXXXXXAQGIHFYFLLFQGVSFLLVGLDLIGEQLD 870
            E KH K  S PNL  +     +E+         KHNRIY KE                  QGIHFYFLLFQG+SFLLVGLDLIGEQ++
Sbjct:  512 ELKHQKTESAPNLDAIA----KEQSAPRKDVKKKHNRIYKKELALSLLLLTAAARSLLSKQGIHFYFLLFQGISFLLVGLDLIGEQIE 595
[Close]
BLAST of CF835773 vs. ExPASy Swiss-Prot
Match: CSLC7_ORYSJ (Probable xyloglucan glycosyltransferase 7 OS=Oryza sativa subsp. japonica GN=CSLC7 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.910e-12
Identity = 43/87 (49.43%), Postives = 49/87 (56.32%), Query Frame = -3 
Query:  607 SKHNKGSSVPNLSEVKMETKQEKMVSXXXXXXKHNRIYMKEXXXXXXXXXXXXXXXXXAQGIHFYFLLFQGVSFLLVGLDLIGEQLD 867
            SK  +  S PNL  +   TK+E          KHNRIY KE                 AQGIHFYFLLFQGVSFL+VGLDLIGEQ++
Sbjct:  605 SKQQRVGSAPNLDAL---TKEESNPKKDSKKKKHNRIYRKELALSFLLLTAAARSLLSAQGIHFYFLLFQGVSFLVVGLDLIGEQVE 688
[Close]
BLAST of CF835773 vs. ExPASy Swiss-Prot
Match: CSLC1_ORYSJ (Probable xyloglucan glycosyltransferase 1 OS=Oryza sativa subsp. japonica GN=CSLC1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.437e-11
Identity = 40/88 (45.45%), Postives = 48/88 (54.55%), Query Frame = -3 
Query:  607 ESKHNKGSSVPNLSEVKMETKQEKMVSXXXXXXKHNRIYMKEXXXXXXXXXXXXXXXXXAQGIHFYFLLFQGVSFLLVGLDLIGEQLD 870
            + K  +  S PNL  +  E+  +K         KHNRIY KE                  QGIHFYFLLFQGVSFL+VGLDLIGEQ++
Sbjct:  607 QPKQQRVGSAPNLDSLAKESHPKK----DSKKKKHNRIYQKELALSFLLLTAAARSLLSVQGIHFYFLLFQGVSFLVVGLDLIGEQVE 690
The following BLAST results are available for this feature:
BLAST of CF835773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CSLCC_ARATH9.893e-1351.72Probable xyloglucan glycosyltransferase 12 OS=Arab... [more]
CSLC9_ORYSJ9.893e-1347.73Probable xyloglucan glycosyltransferase 9 OS=Oryza... [more]
CSLC7_ORYSJ4.910e-1249.43Probable xyloglucan glycosyltransferase 7 OS=Oryza... [more]
CSLC1_ORYSJ2.437e-1145.45Probable xyloglucan glycosyltransferase 1 OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01N21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835773 ID=CF835773; Name=CF835773; organism=Citrus sinensis; type=EST; length=872bp
TTTTTTTTTTTTTTTTTATTCACTTTAAGGACCAATATTTTATCATTTAC
ATTTAGAATCCGTAAGATCTAAACATCCACTGGAAAACTTTACTTATTCC
TTTTTTACTGCCGGAGCAGAAATTATCTACAATTAAATCAACATTTCCAT
TATCACATCAACTGAACTAGAAAGAAGAAAAGCATCAAAAGGAAAATTGT
TTAACTACCTCAAACTGTAACTAAAATTCCTGTTTGACGTTTCAACAACA
ATTTCTTCTTACAAAAGAATTGAACCAAAAACAAAAGAATCAAAAAAACA
AGAAGAAGCAAAAGAGAGGGGCAAAAAAAAGAAATGAAATGAAATCTTAC
ATATACCACTCTCTCCGAATCCAAGGAGAAGCCATTCATCCGTCCATATA
AACACAATATCTTCTCGTATTGGGTGGAAATGGGTTCGAGATTTTGAGGG
TGGATGGAGAACAAGCAAGCAGAGCAGTCACGGCCCTCTAAAGTCCCCCC
CGCAGATGGTTTGTTTCAGTGATAATTAACTATCTGATGTCCACCCATTT
CATGTATGCCTGAAATTATCCATATCTTATCCTACAATGCCTATTGTTTG
CCTTCAATCAAGCTGCTCACCAATCAAGTCTAGACCAACGAGCAGGAATG
ATACCCCCTGAAAGAGTAAGAAGTAGAAATGGATCCCTTGAGCAGACAGG
AGGCTCCTAGCTGAAGCTGTTAATAGAAGGAAGGCCAGTGTCAATTCCTT
CATGTATATCCTATTATGCTTCTTCTTCTTCTTCTTCTTGGAAACCATTT
TCTCTTGTTTAGTTTCCATCTTCACTTCACTGAGGTTGGGTACAGAGGAC
CCCTTATTATGTTTTGACTCTT
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