CF835780

Overview
NameCF835780
Unique NameCF835780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1130 contig Csv1_Contig1130:1..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835780 vs. ExPASy Swiss-Prot
Match: GPT2_ARATH (Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.537e-31
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 3
Query:   18 VAHTIGHVAATVTMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIG 239
            VAHTIGHVAATV+MSKVAVSFTHIIKSGEPAFSVLVSRF  GET P+PVY+SLLPIIGGCALAA+TELNFN+ G
Sbjct:  167 VAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFFMGETFPLPVYLSLLPIIGGCALAAITELNFNITG 240          

HSP 2 Score: 122.094 bits (305), Expect = 3.357e-27
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 2
Query:  386 SGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIGPNFVW*IL*PRILYELF 649
            +GFMGAMISNLAFVFRNIF             NYYACLSMMSL+ILTPF+IAVE PQMWAAGWQ A++Q+GPNFVW ++   + Y L+
Sbjct:  239 TGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSMMSLVILTPFSIAVEVPQMWAAGWQNAVSQVGPNFVWWVVAQSVFYHLY 326          
BLAST of CF835780 vs. ExPASy Swiss-Prot
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.533e-30
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 3
Query:   18 VAHTIGHVAATVTMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIG 239
            VAHTIGHVAATV+MSKVAVSFTHIIKSGEPAFSVLVSRF+ GET P  VY+SL+PIIGGCAL+A+TELNFNMIG
Sbjct:  167 VAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFILGETFPTSVYLSLIPIIGGCALSALTELNFNMIG 240          

HSP 2 Score: 118.242 bits (295), Expect = 4.848e-26
Identity = 56/87 (64.37%), Postives = 63/87 (72.41%), Query Frame = 2
Query:  389 GFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIGPNFVW*IL*PRILYELF 649
            GFMGAMISNLAFVFRNIF             NYYACLSM+SLLILTPFAIAVEGPQMW  GWQ A+A +GP FVW ++   + Y L+
Sbjct:  240 GFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSMLSLLILTPFAIAVEGPQMWVDGWQTALATVGPQFVWWVVAQSVFYHLY 326          
BLAST of CF835780 vs. ExPASy Swiss-Prot
Match: TPT1_BRAOB (Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.028e-15
Identity = 37/77 (48.05%), Postives = 57/77 (74.03%), Query Frame = 3
Query:   18 VAHTIGHVAATVTMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGEIN 248
            V H IGHV + V+ + VAVSFTH IK+ EP F+   S+FL G+ +P+ +++SL P++ G A+A++TEL+FN +G I+
Sbjct:  175 VCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNASASQFLLGQPIPITLWLSLAPVVLGVAMASLTELSFNWLGFIS 251          
BLAST of CF835780 vs. ExPASy Swiss-Prot
Match: TPT_SPIOL (Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.120e-14
Identity = 35/77 (45.45%), Postives = 58/77 (75.32%), Query Frame = 3
Query:   18 VAHTIGHVAATVTMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGEIN 248
            V H IGHV + V+ + VAVSFTH IK+ EP F+   S+F+ G+++P+ +++SL P++ G ++A++TEL+FN +G I+
Sbjct:  172 VCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGQSIPITLWLSLAPVVIGVSMASLTELSFNWLGFIS 248          
BLAST of CF835780 vs. ExPASy Swiss-Prot
Match: TPT_PEA (Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.911e-14
Identity = 33/77 (42.86%), Postives = 58/77 (75.32%), Query Frame = 3
Query:   18 VAHTIGHVAATVTMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGEIN 248
            V H +GHV + V+ + VAVSFTH +K+ EP F+   S+F+ G+++P+ +++SL P++ G ++A++TEL+FN +G I+
Sbjct:  170 VCHALGHVTSNVSFAAVAVSFTHTVKALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTELSFNWLGFIS 246          
BLAST of CF835780 vs. ExPASy Swiss-Prot
Match: TPT_FLAPR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.911e-14
Identity = 34/75 (45.33%), Postives = 57/75 (76.00%), Query Frame = 3
Query:   24 HTIGHVAATVTMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGEIN 248
            H +GHV + V+ + VAVSFTH IKS EP F+   S+F+ G+++P+ +++SL P++ G ++A++TEL+FN +G I+
Sbjct:  178 HALGHVTSNVSFAAVAVSFTHTIKSLEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTELSFNWLGFIS 252          
BLAST of CF835780 vs. ExPASy Swiss-Prot
Match: TPT_FLATR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.559e-14
Identity = 33/75 (44.00%), Postives = 57/75 (76.00%), Query Frame = 3
Query:   24 HTIGHVAATVTMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGEIN 248
            H +GHV + V+ + VAVSFTH IK+ EP F+   S+F+ G+++P+ +++SL P++ G ++A++TEL+FN +G I+
Sbjct:  177 HALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGQSIPISLWLSLAPVVIGVSMASLTELSFNWLGFIS 251          
BLAST of CF835780 vs. ExPASy Swiss-Prot
Match: TPT2_BRAOB (Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13
Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:    3 AVQPL-VAHTIGHVAATVTMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGEINCSKCG-*NDSDYILKKK 296
            A+ PL V HT+G++   +++ KV+VSFTH IK+ EP FSV++S    GE     V  S++PI+GG ALA+VTE++FN  G ++       N S  +L KK
Sbjct:  166 AILPLAVVHTLGNLFTNMSLGKVSVSFTHTIKAMEPFFSVVLSAMFLGEVPTPWVIGSIIPIVGGVALASVTEVSFNWAGFLSAMASNLTNQSRNVLSKK 265          
BLAST of CF835780 vs. ExPASy Swiss-Prot
Match: TPT_MAIZE (Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.759e-13
Identity = 33/77 (42.86%), Postives = 54/77 (70.13%), Query Frame = 3
Query:   18 VAHTIGHVAATVTMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGEIN 248
            + H IGH+ + V+ + VAVSF H IK+ EP FS   ++F+ G+ +P  +++SL P++ G ++A++TEL+FN  G IN
Sbjct:  178 LCHGIGHITSNVSFAAVAVSFAHTIKALEPFFSAAATQFILGQQVPFSLWLSLAPVVIGVSMASLTELSFNWTGFIN 254          
BLAST of CF835780 vs. ExPASy Swiss-Prot
Match: TPT_SOLTU (Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 30/72 (41.67%), Postives = 53/72 (73.61%), Query Frame = 3
Query:   24 HTIGHVAATVTMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIG 239
            H +GHV + V+ + V VSFTH +K+ EP F+   S+F+ G+ +P+ +++SL P++ G ++A++TEL+FN +G
Sbjct:  184 HALGHVTSNVSFAAVRVSFTHTVKALEPFFNAAASQFILGQQIPLALWLSLAPVVLGVSMASLTELSFNWLG 255          
The following BLAST results are available for this feature:
BLAST of CF835780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GPT2_ARATH8.537e-3187.84Glucose-6-phosphate/phosphate translocator 2, chlo... [more]
GPT1_ARATH5.533e-3086.49Glucose-6-phosphate/phosphate translocator 1, chlo... [more]
TPT1_BRAOB5.028e-1548.05Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SPIOL1.120e-1445.45Triose phosphate/phosphate translocator, chloropla... [more]
TPT_PEA1.911e-1442.86Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLAPR1.911e-1445.33Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLATR5.559e-1444.00Triose phosphate/phosphate translocator, chloropla... [more]
TPT2_BRAOB1.238e-1344.00Triose phosphate/phosphate translocator, non-green... [more]
TPT_MAIZE2.759e-1342.86Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SOLTU4.706e-1341.67Triose phosphate/phosphate translocator, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835780 ID=CF835780; Name=CF835780; organism=Citrus sinensis; type=EST; length=765bp
TTGCCGTGCAGCCTTTAGTGGCACATACAATTGGGCATGTAGCAGCAACC
GTAACTATGTCAAAAGTTGCAGTTTCATTCACTCACATCATCAAGAGTGG
TGAGCCTGCATTCAGTGTATTGGTTTCAAGGTTCTTGTTCGGTGAGACAC
TTCCCATGCCGGTTTATATGTCACTCCTGCCGATTATTGGAGGCTGTGCC
CTTGCTGCTGTTACAGAGCTCAACTTCAACATGATTGGTGAGATAAACTG
TTCTAAATGTGGTTGAAATGATTCTGATTACATATTAAAAAAAAAATTCC
CTTTTCTTCGGATGAATACTTGAAAATATTTCATGCTTAGTGATGGTGTT
GCTGGTTTTGATTGTTGAATTTGCTGACGGTGTTTTCAGGATTTATGGGA
GCTATGATATCGAATTTGGCATTCGTGTTTCGGAACATTTTCTCCAAGAA
AGGGATGAAGGGAAAGTCTGTTGGTGGGATGAACTATTATGCTTGTTTGT
CTATGATGTCTCTTTTGATTCTCACACCATTTGCAATTGCTGTGGAGGGC
CCTCAGATGTGGGCTGCTGGCTGGCAAAAGGCTATTGCTCAAATTGGTCC
CAACTTCGTGTGGTAAATACTATGACCTCGTATTTTATATGAACTCTTTT
TTCTACTGTGTATTTTTACTTGTTCATTACCAGTATTTACTGTCATTGAT
ATTTTATTACACGACAATAGATTTTCCAATCTCGGTAGTTATGCTTAAGT
GTCATTTGCATCCGC
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