CF835788

Overview
NameCF835788
Unique NameCF835788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_ARATH (Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=At2g19940 PE=1 SV=2)

HSP 1 Score: 357.451 bits (916), Expect = 5.515e-98
Identity = 185/264 (70.08%), Postives = 215/264 (81.44%), Query Frame = 2
Query:   53 SAATFSSLCFSRGCFWKDEAKNSPRVMKGSGKVKISSIRGSATLPTK-SLQVEDGKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            +A+ FSS+   +GC++K E K    +     + K  ++      P+  S +V    + K EK +RIGLLGASGYTGAEIVRLLANHP+F +TLMTADRKAGQS+ SVFPHL +Q LPT+V+VKDADFS VDAVFCCLPHGTTQEIIK LP +LKIVDLSADFRLR+++EYEEWYGQPH A +LQKE VYGLTEI REDIK ARLVANPGCYPT+IQLPLVPL++ANLI++ NIIID KSGVSGAGRGAKEANLYSEIAEGI SY
Sbjct:    3 TASAFSSI---QGCWFKGERK----IRVADKRAKRLTLGSHVASPSSMSFRVSASSSVKPEKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVKDADFSTVDAVFCCLPHGTTQEIIKELPTALKIVDLSADFRLRNIAEYEEWYGQPHKAVELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLKANLIKHENIIIDAKSGVSGAGRGAKEANLYSEIAEGISSY 259          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_ORYSJ (Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0617900 PE=1 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 1.150e-95
Identity = 176/240 (73.33%), Postives = 204/240 (85.00%), Query Frame = 2
Query:  128 VMKGSGKVKISSIRGSATLPTKSLQVEDGKTQ--KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            ++K + KV  SS+R  A++ +   +    KT   KS ++VRI +LGASGYTGAEIVRLLANHP F I +MTADRKAG+  GSVFPHLI+QDLP +VAVKDADFSNVDAVFCCLPHGTTQEIIKGLP+ LKIVDLSADFRLRD++EY EWYG  H AP+LQ+EAVYGLTE+ R +I+NARLVANPGCYPTSIQLPLVPLI+A LI+  NIIID KSGVSGAGRGAKEANLY+EIAEGI++Y
Sbjct:   34 MLKTTPKVGSSSVRVRASVASSPQKQHSPKTSGVKSGEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPQELKIVDLSADFRLRDINEYAEWYGHSHRAPELQQEAVYGLTEVLRNEIRNARLVANPGCYPTSIQLPLVPLIKAKLIKVSNIIIDAKSGVSGAGRGAKEANLYTEIAEGIHAY 273          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_RHORT (N-acetyl-gamma-glutamyl-phosphate reductase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=argC PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.283e-62
Identity = 123/208 (59.13%), Postives = 150/208 (72.12%), Query Frame = 2
Query:  233 KQVRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKS-----LKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            ++V + +LGASGYTGAE+VRLLA HP   +  +TA+RKAGQ+  SVFPHL   DLP +  ++  D+S +D VFC LPHGTTQ II  L        L+I DLSADFRL D   Y+ WYG  H A +LQKEAVYGLTEI+R  I  ARLVA PGCYPTS QLPL+PL++A LI    IIID KSG SGAGR AKE +L+ E++EGI++Y
Sbjct:    3 ERVNVAILGASGYTGAELVRLLARHPRVTLAALTANRKAGQAFASVFPHLGGLDLPVLSTIEAVDWSAIDFVFCALPHGTTQTIIGDLLNGPHGGRLRIADLSADFRLADPMVYQTWYGHAHEAVELQKEAVYGLTEINRAAIATARLVAVPGCYPTSAQLPLIPLLRAGLIDPDAIIIDAKSGASGAGRDAKEGSLHCEVSEGIHAY 210          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_OLICO (N-acetyl-gamma-glutamyl-phosphate reductase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=argC PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.317e-62
Identity = 117/205 (57.07%), Postives = 149/205 (72.68%), Query Frame = 2
Query:  242 RIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFS--NVDAVFCCLPHGTTQEIIKGL---PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            +IG+LGASGYTGAE+VRLL  HP   I L+TADR+AG  +G VFP     DLP +V++   D++   +D VFC LPH TTQ ++K L       K+VDLSADFRL+D + Y +WYG  H A DLQ+EAVYGLTEI R D+K ARLVANPGCY T  QLPL+PL++A  I+   I+ID KSG++GAGR AKE  L+SE++EG ++Y
Sbjct:    6 KIGILGASGYTGAELVRLLLRHPRVEIVLLTADRRAGHKMGDVFPQFAPYDLPQLVSIDSVDWAAAKLDLVFCALPHATTQTVLKDLLSKAPETKVVDLSADFRLQDPAVYAKWYGHEHHALDLQQEAVYGLTEIYRRDVKKARLVANPGCYTTCAQLPLIPLLKAKAIESDEIVIDAKSGMTGAGRSAKEEMLFSEVSEGFHAY 210          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_RHOS4 (N-acetyl-gamma-glutamyl-phosphate reductase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=argC PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.041e-61
Identity = 112/199 (56.28%), Postives = 147/199 (73.87%), Query Frame = 2
Query:  245 IGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            I +LGASGYTGAE+VRL+A HP   I  ++ DRKAG ++  VFP L   DLP +  +++ DFS+VD  FC LPH T+Q +I GLP+ LK+VDLSADFRLRD + YE WYG+PH AP+LQKEAVYGLTE  R++I+ ARLVA  GC   + Q  + PLI+A +I   +I+ID K+GVSGAGR  KE  L++E++EG ++Y
Sbjct:    5 IAILGASGYTGAELVRLIATHPAMRIVALSGDRKAGMAMSEVFPFLRHLDLPRLQKIEEIDFSSVDLAFCALPHATSQAVIAGLPRDLKVVDLSADFRLRDPAAYETWYGKPHAAPELQKEAVYGLTEFYRDEIRGARLVAGTGCNAATGQYAIRPLIEAGVIDLDDILIDLKAGVSGAGRSLKENLLHAELSEGTHAY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_RHOSK (N-acetyl-gamma-glutamyl-phosphate reductase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=argC PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.196e-61
Identity = 113/199 (56.78%), Postives = 147/199 (73.87%), Query Frame = 2
Query:  245 IGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            I +LGASGYTGAE+VRL+A HP   I  ++ DRKAG ++  VFP L   DLP +  +++ DFS+VD  FC LPH T+Q +I GLP+ LKIVDLSADFRLRD + YE WYG+PH AP+LQKEAVYGLTE  R++I+ ARLVA  GC   + Q  + PLI+A +I   +I+ID K+GVSGAGR  KE  L++E++EG ++Y
Sbjct:    5 IAILGASGYTGAELVRLIATHPSMRIVALSGDRKAGMAMAEVFPFLRHLDLPRLQKIEEIDFSSVDLAFCALPHATSQAVIAGLPRDLKIVDLSADFRLRDPAAYETWYGKPHAAPELQKEAVYGLTEFYRDEIRAARLVAGTGCNAATGQYAIRPLIEAGVIDLDDILIDLKAGVSGAGRSLKENLLHAELSEGTHAY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_RHOS5 (N-acetyl-gamma-glutamyl-phosphate reductase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=argC PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.196e-61
Identity = 113/199 (56.78%), Postives = 146/199 (73.37%), Query Frame = 2
Query:  245 IGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            I +LGASGYTGAE+VRL+A HP   I  ++ DRKAG ++  VFP L   DLP +  + + +FSNVD  FC LPH T+QE+I  LP+ LKIVDLSADFRLRD + YE WYG+PH AP+LQKEAVYGLTE  R++I+ ARLVA  GC   + Q  + PLI+A +I   +I+ID K+GVSGAGR  KE  L++E++EG ++Y
Sbjct:    5 IAILGASGYTGAELVRLIATHPSMRIVALSGDRKAGMAMSEVFPFLRHLDLPRLQKIDEINFSNVDLAFCALPHATSQEVISALPRDLKIVDLSADFRLRDPAAYETWYGKPHSAPELQKEAVYGLTEFYRDEIRGARLVAGTGCNAATGQYAIRPLIEAGVIDLDDILIDLKAGVSGAGRSLKENLLHAELSEGTHAY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_RHOS1 (N-acetyl-gamma-glutamyl-phosphate reductase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=argC PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.564e-60
Identity = 111/199 (55.78%), Postives = 146/199 (73.37%), Query Frame = 2
Query:  245 IGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            I +LGASGYTGAE+VRL+A HP   I  ++ DRKAG ++  VFP L   DLP +  +++ DFS+VD  FC LPH T+Q +I  LP+ LK+VDLSADFRLRD + YE WYG+PH AP+LQKEAVYGLTE  R++I+ ARLVA  GC   + Q  + PLI+A +I   +I+ID K+GVSGAGR  KE  L++E++EG ++Y
Sbjct:    5 IAILGASGYTGAELVRLIATHPAMRIVALSGDRKAGMAMSEVFPFLRHLDLPRLQKIEEIDFSSVDLAFCALPHATSQAVIADLPRDLKVVDLSADFRLRDPAAYETWYGKPHAAPELQKEAVYGLTEFYRDEIRGARLVAGTGCNAATGQYAIRPLIEAGVIDLDDILIDLKAGVSGAGRSLKENLLHAELSEGTHAY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_RHOCA (N-acetyl-gamma-glutamyl-phosphate reductase OS=Rhodobacter capsulatus GN=argC PE=3 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 7.785e-60
Identity = 111/200 (55.50%), Postives = 142/200 (71.00%), Query Frame = 2
Query:  242 RIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            +I +LGASGYTGAE+ R++A HP   IT ++ DRKAG  +G VFPHL    LP +V +++ DFS +D  FC LPH T+Q +I  LP+ LK+VDLSADFRLRD +EYE+WYG+PH A DLQ EAVYGLTE  RE++K ARL A  GC   + Q  + PLI+A +I    I+ID K+GVSGAGR  KE  L++E+A G   Y
Sbjct:    4 KIAILGASGYTGAELARIIATHPEMEITALSGDRKAGMRMGEVFPHLRHIGLPDLVKIEEIDFSGIDLAFCALPHATSQAVIAELPRDLKVVDLSADFRLRDAAEYEKWYGKPHAAMDLQAEAVYGLTEFYREELKTARLCAGTGCNAAAGQYAIRPLIEAGVIDLDEIVIDLKAGVSGAGRSLKENLLHAELAGGTMPY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_JANSC (N-acetyl-gamma-glutamyl-phosphate reductase OS=Jannaschia sp. (strain CCS1) GN=argC PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.579e-58
Identity = 109/200 (54.50%), Postives = 142/200 (71.00%), Query Frame = 2
Query:  242 RIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            +I +LGASGYTGAE+ RL+A HP   I  +T DRKAGQ + SV+P L    LP +V ++D DFS VD  FC LPH T+Q +IK LP  LK+VDLSADFRLRD ++Y +WYG+ H AP LQK+A+YGLTE  R+ I++ARLVA  GC   + Q  L PLI+  ++   +IIID   GVSGAGR  KE  L++E++EG ++Y
Sbjct:    4 KIAILGASGYTGAELCRLIAGHPDMTIVALTGDRKAGQPMASVYPFLRGAGLPDLVRIEDVDFSGVDLAFCALPHATSQSVIKALPADLKVVDLSADFRLRDPADYAKWYGKDHDAPALQKQAIYGLTEFYRDQIRDARLVAGTGCNAATGQFALRPLIENGVVDLDDIIIDLICGVSGAGRALKENLLHAELSEGTHAY 203          
The following BLAST results are available for this feature:
BLAST of CF835788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
ARGC_ARATH5.515e-9870.08Probable N-acetyl-gamma-glutamyl-phosphate reducta... [more]
ARGC_ORYSJ1.150e-9573.33Probable N-acetyl-gamma-glutamyl-phosphate reducta... [more]
ARGC_RHORT1.283e-6259.13N-acetyl-gamma-glutamyl-phosphate reductase OS=Rho... [more]
ARGC_OLICO8.317e-6257.07N-acetyl-gamma-glutamyl-phosphate reductase OS=Oli... [more]
ARGC_RHOS47.041e-6156.28N-acetyl-gamma-glutamyl-phosphate reductase OS=Rho... [more]
ARGC_RHOSK9.196e-6156.78N-acetyl-gamma-glutamyl-phosphate reductase OS=Rho... [more]
ARGC_RHOS59.196e-6156.78N-acetyl-gamma-glutamyl-phosphate reductase OS=Rho... [more]
ARGC_RHOS14.564e-6055.78N-acetyl-gamma-glutamyl-phosphate reductase OS=Rho... [more]
ARGC_RHOCA7.785e-6055.50N-acetyl-gamma-glutamyl-phosphate reductase OS=Rho... [more]
ARGC_JANSC5.579e-5854.50N-acetyl-gamma-glutamyl-phosphate reductase OS=Jan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835788 ID=CF835788; Name=CF835788; organism=Citrus sinensis; type=EST; length=841bp
TTTCAATTTAACCATCCAATCGGACCAATATAAAATAGTTTGATACAAAA
TGAGTGCAGCAACTTTCAGTTCACTTTGTTTCTCTCGAGGGTGTTTCTGG
AAGGATGAGGCTAAGAATTCTCCAAGGGTGATGAAGGGAAGTGGGAAAGT
AAAGATCAGTAGCATAAGAGGTTCTGCGACTTTGCCAACGAAAAGCTTGC
AGGTAGAAGATGGGAAGACTCAAAAGTCTGAAAAGCAAGTCCGCATTGGT
CTTCTTGGCGCAAGTGGTTACACTGGTGCAGAGATTGTACGACTCCTTGC
AAACCATCCATACTTTGGCATTACACTGATGACTGCTGATAGAAAAGCTG
GCCAATCAATTGGATCAGTGTTTCCTCATTTGATATCACAGGATTTGCCA
ACAATGGTTGCTGTCAAGGATGCAGATTTTTCAAATGTCGATGCAGTATT
TTGTTGTTTGCCTCATGGAACCACTCAGGAAATCATCAAAGGACTTCCGA
AGAGTTTAAAGATTGTTGATCTTTCTGCAGACTTTCGATTGCGTGATGTT
TCTGAGTACGAAGAGTGGTATGGACAACCACATATTGCACCTGATTTGCA
GAAAGAAGCTGTGTATGGTTTGACAGAAATTTCGAGGGAAGATATTAAAA
ATGCACGCCTTGTAGCTAATCCTGGTTGTTACCCAACATCCATTCAACTT
CCTCTTGTTCCCTTGATACAGGCTAATTTGATTCAATATAGAAATATCAT
TATTGACGNCAAATCTGGCGTGAGTGGAGCAGGACGTGGCGCTAAGGAGG
CTAATTTATACTCAGAAATAGCTGAAGGCATTTATTCTTAT
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