CF835790

Overview
NameCF835790
Unique NameCF835790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1132 contig Csv1_Contig1132:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS7_HUMAN (Splicing factor, arginine/serine-rich 7 OS=Homo sapiens GN=SFRS7 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 53/121 (43.80%), Postives = 69/121 (57.02%), Query Frame = 3
Query:   75 MPRYDDRYGG-TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 425
            M RY  RYGG T++YVG L +     +LE  FS YG +R V + R+   FAFVEF DPRDA+DA   L+G+ + GSR+ VE +          R    R P   + RC+ CG  GH+A DC
Sbjct:    1 MSRYG-RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRP-PARRPFDPNDRCYECGEKGHYAYDC 119          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS7_BOVIN (Splicing factor, arginine/serine-rich 7 OS=Bos taurus GN=SFRS7 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 53/121 (43.80%), Postives = 69/121 (57.02%), Query Frame = 3
Query:   75 MPRYDDRYGG-TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 425
            M RY  RYGG T++YVG L +     +LE  FS YG +R V + R+   FAFVEF DPRDA+DA   L+G+ + GSR+ VE +          R    R P   + RC+ CG  GH+A DC
Sbjct:    1 MSRYG-RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRP-PARRPFDPNDRCYECGEKGHYAYDC 119          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS5_RAT (Splicing factor, arginine/serine-rich 5 OS=Rattus norvegicus GN=Sfrs5 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  102 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 311
            G R+++GRL    R +D+E  F  YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++   R+ +E A
Sbjct:    3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHA 72          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS5_MOUSE (Splicing factor, arginine/serine-rich 5 OS=Mus musculus GN=Sfrs5 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  102 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 311
            G R+++GRL    R +D+E  F  YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++   R+ +E A
Sbjct:    3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHA 72          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS5_HUMAN (Splicing factor, arginine/serine-rich 5 OS=Homo sapiens GN=SFRS5 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  102 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 311
            G R+++GRL    R +D+E  F  YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++   R+ +E A
Sbjct:    3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHA 72          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS4_MOUSE (Splicing factor, arginine/serine-rich 4 OS=Mus musculus GN=Sfrs4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 311
            R+Y+GRL+ + R RD+E  F  YG+I +VD+K  + FVEF D RDADDA Y LNG+D+ G R+IVE A
Sbjct:    3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS4_HUMAN (Splicing factor, arginine/serine-rich 4 OS=Homo sapiens GN=SFRS4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 311
            R+Y+GRL+ + R RD+E  F  YG+I +VD+K  + FVEF D RDADDA Y LNG+D+ G R+IVE A
Sbjct:    3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS6_HUMAN (Splicing factor, arginine/serine-rich 6 OS=Homo sapiens GN=SFRS6 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 311
            R+Y+GRL+   R +D++  FS YGR+ +VD+K  + FVEF D RDADDA Y LNG+++ G R+IVE A
Sbjct:    3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS7_MOUSE (Splicing factor, arginine/serine-rich 7 OS=Mus musculus GN=Sfrs7 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 53/134 (39.55%), Postives = 72/134 (53.73%), Query Frame = 3
Query:   42 FFLTLSPSAEKMPRYDDRYGG---TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 425
            FFL+L     +  R    +GG   T++YVG L +     +LE  FS YG +R V + R+   FAFVEF DPRDA+DA   L+G+ + GSR+ VE +          R    R P   + RC+ CG  GH+A DC
Sbjct:   16 FFLSLFFFLRRFERGFWLWGGDSETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRP-PARRPFDPNDRCYECGEKGHYAYDC 148          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS6_BOVIN (Splicing factor, arginine/serine-rich 6 OS=Bos taurus GN=SFRS6 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 311
            R+Y+GRL+   R +D++  FS YGR+  +D+K  + FVEF D RDADDA Y LNG+++ G R+IVE A
Sbjct:    3 RVYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70          
The following BLAST results are available for this feature:
BLAST of CF835790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
SFRS7_HUMAN2.333e-1643.80Splicing factor, arginine/serine-rich 7 OS=Homo sa... [more]
SFRS7_BOVIN2.333e-1643.80Splicing factor, arginine/serine-rich 7 OS=Bos tau... [more]
SFRS5_RAT3.047e-1652.86Splicing factor, arginine/serine-rich 5 OS=Rattus ... [more]
SFRS5_MOUSE3.047e-1652.86Splicing factor, arginine/serine-rich 5 OS=Mus mus... [more]
SFRS5_HUMAN3.047e-1652.86Splicing factor, arginine/serine-rich 5 OS=Homo sa... [more]
SFRS4_MOUSE8.866e-1655.88Splicing factor, arginine/serine-rich 4 OS=Mus mus... [more]
SFRS4_HUMAN8.866e-1655.88Splicing factor, arginine/serine-rich 4 OS=Homo sa... [more]
SFRS6_HUMAN1.975e-1552.94Splicing factor, arginine/serine-rich 6 OS=Homo sa... [more]
SFRS7_MOUSE2.580e-1539.55Splicing factor, arginine/serine-rich 7 OS=Mus mus... [more]
SFRS6_BOVIN5.747e-1551.47Splicing factor, arginine/serine-rich 6 OS=Bos tau... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835790 ID=CF835790; Name=CF835790; organism=Citrus sinensis; type=EST; length=709bp
AGGGAGAAGCTGCCCCCATTCGAATCGAAATCTAGGGTTTCTTCTTCTTA
ACTCTCTCGCCCTCAGCAGAAAAAATGCCTCGTTATGATGACCGGTACGG
TGGTACGCGTCTCTATGTTGGCCGCTTGGCTTCACGGACAAGATCACGCG
ATCTTGAGGAGATCTTCAGCAGATATGGGAGAATTCGCGATGTGGATATG
AAGCGTGACTTCGCCTTTGTTGAATTTAGCGACCCTCGCGATGCTGACGA
TGCAAGATATAGCTTAAATGGTCGGGATGTTGATGGAAGCCGTATCATTG
TGGAATTTGCAAGAGGGGGGCCACGTGGTCCTGGTGGATCTCGTGAGTAT
CTTGGTCGAGGCCCTCCTCCTGGATCTGGGCGCTGCTTCAATTGTGGGAT
TGATGGCCATTGGGCTCGAGACTGCAAGGCTGGAGACTGGAAGAATAAGT
GTTATCGCTGTGGTGAACGAGGCCACATAGAACGAAATTGTCAAAACAGT
CCAAAGAAGTTAAGGAGGCCTCGGAGTTATTCACGTTCTCCAAGTCCTCG
TCGTGGTAGAAGCAGGAGCCGTAGTTACAGTAGAGGCCGCAGCGACAGCC
GATCACGATCGCCTGTAAAGAGAGATAGGAGTGTTGAACGTTTTGAGAGA
AGAACAAGGAGCCCCCGAGACAGTAGGAGCCCTAAGCGTCGCAGAAATTC
ACACCATCA
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