CF835802

Overview
NameCF835802
Unique NameCF835802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835802_ssr373 microsatellite CF835802_ssr373:373..392. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1134 contig Csv1_Contig1134:303..1116. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835802 vs. ExPASy Swiss-Prot
Match: ANL2_ARATH (Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.151e-28
Identity = 71/101 (70.30%), Postives = 76/101 (75.25%), Query Frame = -3
Query:  510 IPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 812
            IPAMHVVMNGGDS+YVALLPSGFA++PDG    G                     SLLTVAFQILVN+LPTAKLTVESVETVNNLISCTVQKI+AALQCES
Sbjct:  710 IPAMHVVMNGGDSSYVALLPSGFAVLPDGGIDGG--------GSGDGDQRPVGGGSLLTVAFQILVNNLPTAKLTVESVETVNNLISCTVQKIRAALQCES 802          
BLAST of CF835802 vs. ExPASy Swiss-Prot
Match: HDG1_ARATH (Homeobox-leucine zipper protein HDG1 OS=Arabidopsis thaliana GN=HDG1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.245e-27
Identity = 69/101 (68.32%), Postives = 72/101 (71.29%), Query Frame = -3
Query:  510 IPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 812
            IPAM  VMNGGDSAYVALLPSGFAI+P+G       A                   LLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAAL C+S
Sbjct:  708 IPAMQAVMNGGDSAYVALLPSGFAILPNGQAGTQRCAAEERNSIGNGGCMEEGGS-LLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCDS 807          
BLAST of CF835802 vs. ExPASy Swiss-Prot
Match: ROC5_ORYSJ (Homeobox-leucine zipper protein ROC5 OS=Oryza sativa subsp. japonica GN=ROC5 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.116e-26
Identity = 65/101 (64.36%), Postives = 72/101 (71.29%), Query Frame = -3
Query:  510 IPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 812
            IPAM +VMNGGDS YVALLPSGFAI+PDGP                         SLLTVAFQILVN+ PTAKLTVESVETVNNLISCT++KIK ALQC++
Sbjct:  718 IPAMQLVMNGGDSTYVALLPSGFAILPDGP--------------RIGATGYETGGSLLTVAFQILVNNQPTAKLTVESVETVNNLISCTIKKIKTALQCDA 804          
BLAST of CF835802 vs. ExPASy Swiss-Prot
Match: ROC6_ORYSJ (Homeobox-leucine zipper protein ROC6 OS=Oryza sativa subsp. japonica GN=ROC6 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.242e-23
Identity = 61/104 (58.65%), Postives = 73/104 (70.19%), Query Frame = -3
Query:  519 IPAMHVVMNGGDSAYVALLPSGFAIVPDG------PDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 812
            + +MHVVMNGGDSAYV+LLPSGFAI+PDG      P      +                  SL+TVAFQILVN+LPTAKLTVESV+TV+NL+SCT+QKIK+ALQ
Sbjct:  763 VQSMHVVMNGGDSAYVSLLPSGFAILPDGHNNGASPSPAEVGSGASPNSAAGGGGGSNNTGSLVTVAFQILVNNLPTAKLTVESVDTVSNLLSCTIQKIKSALQ 866          
BLAST of CF835802 vs. ExPASy Swiss-Prot
Match: HDG7_ARATH (Homeobox-leucine zipper protein HDG7 OS=Arabidopsis thaliana GN=HDG7 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.232e-22
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = -3
Query:  519 IPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 812
            IP+M+ VM+GGDSAYVALLPSGF+I+PDG  S                        LLTV FQILVNSLPTAKL VESVETVNNLI+CT+ KI+AAL+
Sbjct:  587 IPSMNTVMSGGDSAYVALLPSGFSILPDGSSSSSD-----QFDTDGGLVNQESKGCLLTVGFQILVNSLPTAKLNVESVETVNNLIACTIHKIRAALR 679          
BLAST of CF835802 vs. ExPASy Swiss-Prot
Match: ROC4_ORYSJ (Homeobox-leucine zipper protein ROC4 OS=Oryza sativa subsp. japonica GN=ROC4 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.609e-22
Identity = 60/100 (60.00%), Postives = 69/100 (69.00%), Query Frame = -3
Query:  513 IPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCE 812
            IPAMH+VM+GGDS+ VALLPSGFAI+P GP                         SLLTVAFQIL NS P+AKLTVESVETV+NLISCT++KIK AL C+
Sbjct:  728 IPAMHLVMSGGDSSCVALLPSGFAILPAGPS---------------IGADHKMGGSLLTVAFQILANSQPSAKLTVESVETVSNLISCTIKKIKTALHCD 812          
BLAST of CF835802 vs. ExPASy Swiss-Prot
Match: ROC7_ORYSJ (Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. japonica GN=ROC7 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.761e-21
Identity = 60/107 (56.07%), Postives = 73/107 (68.22%), Query Frame = -3
Query:  492 IPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES*YDNGV 812
            + AM+VV+NGGD  YVALLPSGFAI+PDGPD  G                     SLLTVAFQILV+S+PTAKL++ SV TVN+LI+CTV++IKAA+      DNGV
Sbjct:  661 VVAMNVVLNGGDPDYVALLPSGFAILPDGPDGGG--------------------GSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAIT----GDNGV 743          
BLAST of CF835802 vs. ExPASy Swiss-Prot
Match: ROC7_ORYSI (Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. indica GN=ROC7 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.761e-21
Identity = 60/107 (56.07%), Postives = 73/107 (68.22%), Query Frame = -3
Query:  492 IPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES*YDNGV 812
            + AM+VV+NGGD  YVALLPSGFAI+PDGPD  G                     SLLTVAFQILV+S+PTAKL++ SV TVN+LI+CTV++IKAA+      DNGV
Sbjct:  661 VVAMNVVLNGGDPDYVALLPSGFAILPDGPDGGG--------------------GSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAIT----GDNGV 743          
BLAST of CF835802 vs. ExPASy Swiss-Prot
Match: HDG2_ARATH (Homeobox-leucine zipper protein HDG2 OS=Arabidopsis thaliana GN=HDG2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.830e-21
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = -3
Query:  510 IPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 812
            I AM++V+NGGD  YVALLPSGFAI+PDG  + G                     SLLTVAFQILV+S+PTAKL++ SV TVNNLI+CTV++IKA++ CE+
Sbjct:  634 IVAMNIVLNGGDPDYVALLPSGFAILPDGNANSGA--------------PGGDGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASMSCET 720          
BLAST of CF835802 vs. ExPASy Swiss-Prot
Match: ROC2_ORYSJ (Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica GN=ROC2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.382e-20
Identity = 57/101 (56.44%), Postives = 70/101 (69.31%), Query Frame = -3
Query:  510 IPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 812
            + AM+VV+NGGD  YVALLPSGFAI+PDGP   G                     SLLTVAFQILV+S+PTAKL++ SV TVN+LI+CTV++IKAA+  ES
Sbjct:  689 VVAMNVVLNGGDPDYVALLPSGFAILPDGPAHDG--------GDGDGGVGVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAVSGES 781          
The following BLAST results are available for this feature:
BLAST of CF835802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ANL2_ARATH1.151e-2870.30Homeobox-leucine zipper protein ANTHOCYANINLESS 2 ... [more]
HDG1_ARATH8.245e-2768.32Homeobox-leucine zipper protein HDG1 OS=Arabidopsi... [more]
ROC5_ORYSJ9.116e-2664.36Homeobox-leucine zipper protein ROC5 OS=Oryza sati... [more]
ROC6_ORYSJ3.242e-2358.65Homeobox-leucine zipper protein ROC6 OS=Oryza sati... [more]
HDG7_ARATH1.232e-2260.20Homeobox-leucine zipper protein HDG7 OS=Arabidopsi... [more]
ROC4_ORYSJ1.609e-2260.00Homeobox-leucine zipper protein ROC4 OS=Oryza sati... [more]
ROC7_ORYSJ6.761e-2156.07Homeobox-leucine zipper protein ROC7 OS=Oryza sati... [more]
ROC7_ORYSI6.761e-2156.07Homeobox-leucine zipper protein ROC7 OS=Oryza sati... [more]
HDG2_ARATH8.830e-2155.45Homeobox-leucine zipper protein HDG2 OS=Arabidopsi... [more]
ROC2_ORYSJ4.382e-2056.44Homeobox-leucine zipper protein ROC2 OS=Oryza sati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01O15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835802 ID=CF835802; Name=CF835802; organism=Citrus sinensis; type=EST; length=814bp
TTTTTTTTTTTTTTTTTGAGCACCCAACAACAACATTAGCTAACCTGGTC
ACCAAGTCGTTACAGGGAGTTCAGTTCAAGTTCCCCATTTGGAAAAATGA
AACCGAAAGCAAATAGTTAAATTTAAATTGCACAAAGGAATACTTCAAAC
TTCATTTCAGTTTTGTTTTTTTGACAATTCATAAAGGGGTTGACCTGAGT
CAATACCCGAACCACCACCCTTGCCTTGTGTTAAGAATAGTCTCTGCTCG
AGTCCGTGACTCAGCCCCATCCTCATCACCATGCAAGGAGTTTCCACGCG
CGGTTCGTTCTTGACTCAACACCCCCGAAGCAAAGCAAACACACTGTCAC
ACGCGCCCACGTACCAAAGCTGTCTCTCTCTCTCTCTCTCTCTGTTCACC
ACAATTCACAAGCCACGTGATTAGCTACAATTAACCGTAGCCATGCACAA
AGCAAAACACCCCATCGTGTCAAGTTAAAAAACCAAACACCAACTCCATT
ATCGTATCAGCTTTCACATTGAAGAGCGGCCTTGATCTTCTGAACAGTGC
ATGATATTAGATTGTTGACCGTCTCCACAGATTCTACCGTAAGCTTGGCC
GTCGGAAGACTATTCACCAAGATTTGGAAGGCCACTGTTAAAAGCGAGCC
ACCCACTCTCTGTGACCCACCGTTGCTCCCATTCCCACTTGTGGGGCCAT
TAGCCAGGGGCCCTCGTGAGTCTGGACCATCTGGAACAATTGCAAATCCA
GAAGGAAGGAGAGCCACGTAGGCAGAATCACCACCGTTCATCACCACGTG
CATGGCCGGGATGT
back to top