CF835803

Overview
NameCF835803
Unique NameCF835803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1134 contig Csv1_Contig1134:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: ANL2_ARATH (Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 5.726e-78
Identity = 152/202 (75.25%), Postives = 168/202 (83.17%), Query Frame = 2
Query:    2 VDDPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 607
            VDDP EPPGIVLSAATS+WLP +PQRL++FLR+ER+R EWDILSNGGPMQEMAHI KGQD G  VSLLR++A+NANQSSMLILQETC DA+G+LVVYAPVDIPAMHVVMNGGDS+YVALLPSGFA++PDG    G                      LLTVAFQILVN+LPTAKLTVESVETVNNLISCTVQKI+AALQCES
Sbjct:  611 VDDPGEPPGIVLSAATSVWLPAAPQRLYDFLRNERMRCEWDILSNGGPMQEMAHITKGQDQG--VSLLRSNAMNANQSSMLILQETCIDASGALVVYAPVDIPAMHVVMNGGDSSYVALLPSGFAVLPDGGIDGG--------GSGDGDQRPVGGGSLLTVAFQILVNNLPTAKLTVESVETVNNLISCTVQKIRAALQCES 802          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: ROC5_ORYSJ (Homeobox-leucine zipper protein ROC5 OS=Oryza sativa subsp. japonica GN=ROC5 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.359e-76
Identity = 145/202 (71.78%), Postives = 165/202 (81.68%), Query Frame = 2
Query:    2 VDDPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 607
            V +P EPPG+VLSAATS+W+PV+P++LFNFLRDE+LR+EWDILSNGGPMQEM  IAKGQ  GN VSLLRASA++ANQSSMLILQETCTDA+GS+VVYAPVDIPAM +VMNGGDS YVALLPSGFAI+PDGP                          LLTVAFQILVN+ PTAKLTVESVETVNNLISCT++KIK ALQC++
Sbjct:  617 VSEPGEPPGVVLSAATSVWVPVAPEKLFNFLRDEQLRAEWDILSNGGPMQEMTQIAKGQRDGNSVSLLRASAVSANQSSMLILQETCTDASGSIVVYAPVDIPAMQLVMNGGDSTYVALLPSGFAILPDGP--------------RIGATGYETGGSLLTVAFQILVNNQPTAKLTVESVETVNNLISCTIKKIKTALQCDA 804          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: HDG1_ARATH (Homeobox-leucine zipper protein HDG1 OS=Arabidopsis thaliana GN=HDG1 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.194e-75
Identity = 150/202 (74.26%), Postives = 165/202 (81.68%), Query Frame = 2
Query:    2 VDDPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 607
            V++P EPPGI+L+AATS+W+PVSP+RLF+FL +ERLRSEWDILSNGGPM+EMAHIAKG D  N VSLLRASAINANQSSMLILQET  DAAG++VVYAPVDIPAM  VMNGGDSAYVALLPSGFAI+P+G       A                   LLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAAL C+S
Sbjct:  607 VNNPGEPPGIILNAATSVWMPVSPRRLFDFLGNERLRSEWDILSNGGPMKEMAHIAKGHDRSNSVSLLRASAINANQSSMLILQETSIDAAGAVVVYAPVDIPAMQAVMNGGDSAYVALLPSGFAILPNGQAGTQRCA-AEERNSIGNGGCMEEGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCDS 807          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: ROC2_ORYSJ (Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica GN=ROC2 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.563e-67
Identity = 132/202 (65.35%), Postives = 158/202 (78.22%), Query Frame = 2
Query:    2 VDDPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 607
            VDDP  PPGIVL+AATS WLPV P+R+F+FLRDE  RSEWDILSNGG +QEMAHIA G+D GNCVSLLR ++ N+NQS+MLILQE+CTDA+GS V+YAPVD+ AM+VV+NGGD  YVALLPSGFAI+PDGP   G                      LLTVAFQILV+S+PTAKL++ SV TVN+LI+CTV++IKAA+  ES
Sbjct:  588 VDDPGRPPGIVLNAATSFWLPVPPKRVFDFLRDESSRSEWDILSNGGIVQEMAHIANGRDQGNCVSLLRVNSSNSNQSNMLILQESCTDASGSYVIYAPVDVVAMNVVLNGGDPDYVALLPSGFAILPDGPAHDG--------GDGDGGVGVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAVSGES 781          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: ROC7_ORYSI (Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. indica GN=ROC7 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.041e-67
Identity = 134/208 (64.42%), Postives = 157/208 (75.48%), Query Frame = 2
Query:    2 VDDPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES*YDNGV 625
            VDDP  PPGIVL+AATS WLPV P R+F+FLRD+  RSEWDILSNGG +QEMAHIA G+DHGN VSLLR +  N+NQS+MLILQE CTDA GS V+YAPVD+ AM+VV+NGGD  YVALLPSGFAI+PDGPD  G                      LLTVAFQILV+S+PTAKL++ SV TVN+LI+CTV++IKAA+      DNGV
Sbjct:  560 VDDPGRPPGIVLNAATSFWLPVPPSRVFDFLRDDSTRSEWDILSNGGVVQEMAHIANGRDHGNAVSLLRVNNANSNQSNMLILQECCTDATGSYVIYAPVDVVAMNVVLNGGDPDYVALLPSGFAILPDGPDGGG--------------------GSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAIT----GDNGV 743          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: ROC7_ORYSJ (Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. japonica GN=ROC7 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.666e-67
Identity = 133/208 (63.94%), Postives = 157/208 (75.48%), Query Frame = 2
Query:    2 VDDPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES*YDNGV 625
            VDDP  PPGI+L+AATS WLPV P R+F+FLRD+  RSEWDILSNGG +QEMAHIA G+DHGN VSLLR +  N+NQS+MLILQE CTDA GS V+YAPVD+ AM+VV+NGGD  YVALLPSGFAI+PDGPD  G                      LLTVAFQILV+S+PTAKL++ SV TVN+LI+CTV++IKAA+      DNGV
Sbjct:  560 VDDPGRPPGIILNAATSFWLPVPPSRVFDFLRDDSTRSEWDILSNGGVVQEMAHIANGRDHGNAVSLLRVNNANSNQSNMLILQECCTDATGSYVIYAPVDVVAMNVVLNGGDPDYVALLPSGFAILPDGPDGGG--------------------GSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAIT----GDNGV 743          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: ROC1_ORYSJ (Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica GN=ROC1 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.013e-66
Identity = 131/198 (66.16%), Postives = 154/198 (77.78%), Query Frame = 2
Query:    2 VDDPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAAL 595
            VDDP  PPGIVL+AATS WLPV P  +F+FLRDE  RSEWDILSNGG +QEMAHIA G+DHGN VSLLR ++ N+NQS+MLILQE+CTDA+GS VVYAPVDI AM+VV+NGGD  YVALLPSGFAI+PDGP      A                   LLTVAFQILV+S+PTAKL++ SV TVN+LI+CTV++IKAA+
Sbjct:  587 VDDPGRPPGIVLNAATSFWLPVPPAAVFDFLRDETSRSEWDILSNGGAVQEMAHIANGRDHGNSVSLLRVNSANSNQSNMLILQESCTDASGSYVVYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGPSGNAQAA-------VGENGSGSGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAV 777          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: ROC4_ORYSJ (Homeobox-leucine zipper protein ROC4 OS=Oryza sativa subsp. japonica GN=ROC4 PE=2 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 1.728e-66
Identity = 130/201 (64.68%), Postives = 153/201 (76.12%), Query Frame = 2
Query:    2 VDDPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCE 604
            VD+P  PPG+VLSAATS+W+PV P+RLFNFL ++ LR+EWDILSNGGPMQE+  IAKGQ +GN V LL+AS     Q+SMLILQETC DA+GS+VVYAPVDIPAMH+VM+GGDS+ VALLPSGFAI+P GP                          LLTVAFQIL NS P+AKLTVESVETV+NLISCT++KIK AL C+
Sbjct:  627 VDEPGTPPGVVLSAATSVWMPVMPERLFNFLHNKGLRAEWDILSNGGPMQEVTSIAKGQQNGNTVCLLKASPTKDKQNSMLILQETCADASGSMVVYAPVDIPAMHLVMSGGDSSCVALLPSGFAILPAGPS---------------IGADHKMGGSLLTVAFQILANSQPSAKLTVESVETVSNLISCTIKKIKTALHCD 812          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: HDG2_ARATH (Homeobox-leucine zipper protein HDG2 OS=Arabidopsis thaliana GN=HDG2 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.947e-66
Identity = 127/202 (62.87%), Postives = 156/202 (77.23%), Query Frame = 2
Query:    2 VDDPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 607
            VDDP  PPGIVLSAATS W+PV P+R+F+FLRDE  R+EWDILSNGG +QEMAHIA G+D GNCVSLLR ++ N++QS+MLILQE+CTD   S V+YAPVDI AM++V+NGGD  YVALLPSGFAI+PDG  + G                      LLTVAFQILV+S+PTAKL++ SV TVNNLI+CTV++IKA++ CE+
Sbjct:  533 VDDPGRPPGIVLSAATSFWIPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNIVLNGGDPDYVALLPSGFAILPDGNANSG--------------APGGDGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASMSCET 720          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: PDF2_ARATH (Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.481e-65
Identity = 127/201 (63.18%), Postives = 156/201 (77.61%), Query Frame = 2
Query:    2 VDDPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCE 604
            +DDP  PPGIVLSAATS W+PV+P+R+F+FLRDE  R EWDILSNGG +QEMAHIA G + GNCVSLLR ++ N++QS+MLILQE+CTDA+GS V+YAPVDI AM+VV++GGD  YVALLPSGFAI+PDG  S G                      LLTVAFQILV+S+PTAKL++ SV TVN+LI CTV++IKAA+ C+
Sbjct:  540 MDDPGRPPGIVLSAATSFWIPVAPKRVFDFLRDENSRKEWDILSNGGMVQEMAHIANGHEPGNCVSLLRVNSGNSSQSNMLILQESCTDASGSYVIYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDG--SVGGGDGNQHQEMVSTTSSGSCGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAAVSCD 738          
The following BLAST results are available for this feature:
BLAST of CF835803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ANL2_ARATH5.726e-7875.25Homeobox-leucine zipper protein ANTHOCYANINLESS 2 ... [more]
ROC5_ORYSJ5.359e-7671.78Homeobox-leucine zipper protein ROC5 OS=Oryza sati... [more]
HDG1_ARATH1.194e-7574.26Homeobox-leucine zipper protein HDG1 OS=Arabidopsi... [more]
ROC2_ORYSJ1.563e-6765.35Homeobox-leucine zipper protein ROC2 OS=Oryza sati... [more]
ROC7_ORYSI2.041e-6764.42Homeobox-leucine zipper protein ROC7 OS=Oryza sati... [more]
ROC7_ORYSJ2.666e-6763.94Homeobox-leucine zipper protein ROC7 OS=Oryza sati... [more]
ROC1_ORYSJ1.013e-6666.16Homeobox-leucine zipper protein ROC1 OS=Oryza sati... [more]
ROC4_ORYSJ1.728e-6664.68Homeobox-leucine zipper protein ROC4 OS=Oryza sati... [more]
HDG2_ARATH2.947e-6662.87Homeobox-leucine zipper protein HDG2 OS=Arabidopsi... [more]
PDF2_ARATH9.481e-6563.18Homeobox-leucine zipper protein PROTODERMAL FACTOR... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01O15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835803 ID=CF835803; Name=CF835803; organism=Citrus sinensis; type=EST; length=678bp
CGTTGACGATCCCGTTGAGCCTCCAGGAATCGTGTTAAGCGCTGCCACCT
CCCTTTGGCTGCCGGTGTCTCCTCAAAGACTCTTCAATTTTCTACGTGAT
GAGCGGCTTAGAAGCGAGTGGGATATTTTGTCGAACGGTGGGCCCATGCA
GGAGATGGCCCACATTGCTAAAGGACAAGATCACGGCAACTGCGTCTCCC
TTCTACGTGCTAGTGCCATAAACGCAAACCAGAGCAGCATGTTGATACTA
CAGGAGACATGCACAGACGCCGCTGGGTCGCTTGTCGTCTACGCGCCCGT
TGACATCCCGGCCATGCACGTGGTGATGAACGGTGGTGATTCTGCCTACG
TGGCTCTCCTTCCTTCTGGATTTGCAATTGTTCCAGATGGTCCAGACTCA
CGAGGGCCCCTGGCTAATGGCCCCACAAGTGGGAATGGGAGCAACGGTGG
GTCACAGAGAGTGGGTGGCTCGCTTTTAACAGTGGCCTTCCAAATCTTGG
TGAATAGTCTTCCGACGGCCAAGCTTACGGTAGAATCTGTGGAGACGGTC
AACAATCTAATATCATGCACTGTTCAGAAGATCAAGGCCGCTCTTCAATG
TGAAAGCTGATACGATAATGGAGTTGGTGTTTGGTTTTTTAACTTGACAC
GATGGGGGTGTTTTGCTTTGTGCATGGC
back to top