CF835813

Overview
NameCF835813
Unique NameCF835813
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF835813 vs. ExPASy Swiss-Prot
Match: CCR4C_ARATH (Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis thaliana GN=CCR4-3 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13
Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = -3 
Query:  345 SPRTRGIKGDPLAFSSPSKFLGTVAYLWSRKALVPPRVWDPLPVDILRRTGGFPCTPLARDHWPWVFEFAF 557
            S  TR   G+PLA S  SKFLGTV YLW    L+P RV D LP+D+L +T G PC  L  DH   V EF F
Sbjct:  374 SANTRDSVGEPLATSYHSKFLGTVDYLWYSDGLLPARVLDTLPIDVLCKTKGLPCQELGSDHLALVSEFVF 444
[Close]
BLAST of CF835813 vs. ExPASy Swiss-Prot
Match: CCR4E_ARATH (Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana GN=CCR4-5 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.314e-12
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = -3 
Query:  345 RTRGIKGDPLAFSSPSKFLGTVAYLWSRKALVPPRVWDPLPVDILRRTGGFPCTPLARDHWPWVFEFAF 551
            RTR  +G+PLA +  S+FLGTV Y+W  K LVP RV + LP D+LRRTGG P      DH     E  F
Sbjct:  381 RTRDQRGEPLATTYHSRFLGTVDYIWHTKELVPVRVLETLPADVLRRTGGLPSENWGSDHLAIACELGF 449
The following BLAST results are available for this feature:
BLAST of CF835813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CCR4C_ARATH3.348e-1353.52Carbon catabolite repressor protein 4 homolog 3 OS... [more]
CCR4E_ARATH6.314e-1250.72Carbon catabolite repressor protein 4 homolog 5 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01O22_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835813 ID=CF835813; Name=CF835813; organism=Citrus sinensis; type=EST; length=559bp
TTTTTTTTTTTTTTTTTGGGGAAATGCCTTTTTCAAGTTTCTGGTTCGAC
TTAATAAAAAAAAAAATGTCCCCTAGCAGTCCCTACCCATTTTGACATTT
TGGAGGGGATCTGAATAATAAAGGGGGGGACCGGGATTTTTTCCCCAAAG
GGTGACCGAAAAAATCCCCCTATTGGGAAGAAAAAGTTTATTCCACTTCC
CCCCCTAAGTTTAAACCCCCCCGTTTGCTACATCAACTGCCAGGGGGCCA
GGCCGGGGGCATCGTGCACATTTTTACATCCGGGGATCGCTATCCTCTCG
GAGCTTGGCGAAATATAGTCATTGCATTCATTGATAGCTTCGGGAAATGC
AAACTCAAAAACCCAGGGCCAGTGATCCCTGGCCAGGGGCGTGCATGGAA
AGCCCCCTGTCCTTCTCAAAATATCAACTGGAAGGGGATCCCAAACTCTG
GGAGGGACAAGGGCTTTCCTGGACCATAAGTAAGCAACAGTTCCCAAAAA
TTTTGAGGGGGATGAAAAAGCCAATGGGTCCCCCTTGATGCCCCTTGTTC
TTGGGGAAC
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