CF835814

Overview
NameCF835814
Unique NameCF835814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1135 contig Csv1_Contig1135:1..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835814 vs. ExPASy Swiss-Prot
Match: CCR4C_ARATH (Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis thaliana GN=CCR4-3 PE=2 SV=2)

HSP 1 Score: 300.442 bits (768), Expect = 6.494e-81
Identity = 143/228 (62.72%), Postives = 182/228 (79.82%), Query Frame = 3
Query:   69 WYNPLRRK--PFDEPSPDVLRHWIDADPNPISSD-ERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILNVMEKVGYAGCYKRRTGYNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMR-NTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRARIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSS 740
            W NPL R+  P   PS  + R WID+D  P+S   ERF+VVSYNILGD N+  HR+LY NV   Y+KW  RKRLIC+ELI LNPDII MQEVD+YFD+ ++MEK GYAG YKRRTG NVDGCAMFWKAD+F +LE+ +IEF +FG+R+NVAQL+  E+R + KSR++L+GNIHVLYNPN+G+VKLGQ+  L S+A ++++KWG+IP+VL GDFN TP+S +Y FL+SS
Sbjct:   72 WQNPLPRRQHPDQIPSSQIARDWIDSDTTPVSQALERFTVVSYNILGDGNSSYHRELYSNVSVPYLKWGYRKRLICEELIRLNPDIISMQEVDKYFDLFSMMEKAGYAGSYKRRTGDNVDGCAMFWKADRFGVLERENIEFSQFGMRDNVAQLAVLELRKSNKSRKILLGNIHVLYNPNQGDVKLGQVRSLCSKAHLLSKKWGDIPIVLCGDFNSTPKSPLYNFLASS 299          
BLAST of CF835814 vs. ExPASy Swiss-Prot
Match: CCR4E_ARATH (Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana GN=CCR4-5 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.044e-54
Identity = 105/231 (45.45%), Postives = 153/231 (66.23%), Query Frame = 3
Query:   84 RRKPFDEPSPDVLRHWIDADPNPISSDERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILNVMEKVGYAGCYKRRTGYNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEM------------RNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRARIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSS 740
            RR+  ++ S  V R W+ +  N  +  ++  +VSYN+LG  NA  H DLY NV  ++++W+RRK LIC+E+   N  I+C+QEVDR+ D+  +++  G+ G +K RTG   DGCA+FWK + F LL+   IEF +FG+R NVAQL   EM            R++  RR++VGNIHVL+NP RG++KLGQ+     +A  ++++WGNIPV +AGD N TPQSAIY F++S+
Sbjct:   71 RRRTKEKISSSVEREWVFSANNFENLADKLVLVSYNLLGVDNASNHMDLYYNVPRKHLEWSRRKHLICKEISRYNASILCLQEVDRFDDLDVLLKNRGFRGVHKSRTGEASDGCAIFWKENLFELLDHQHIEFDKFGMRNNVAQLCVLEMNCEEDPKSKLRVRSSDPRRLVVGNIHVLFNPKRGDIKLGQVRLFLEKAYKLSQEWGNIPVAIAGDLNSTPQSAIYDFIASA 301          
BLAST of CF835814 vs. ExPASy Swiss-Prot
Match: CCR4F_ARATH (Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana GN=CCR4-6 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.671e-44
Identity = 96/233 (41.20%), Postives = 139/233 (59.66%), Query Frame = 3
Query:   84 RRKPFDEPSPDVLRHWIDADPNPISSDERFSVVSYNILGDKNAFKH-RDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILNVMEKVGYAGCYKRRTGYNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTK---------------SRRVLVGNIHVLYNPNRGEVKLGQICFLSSRARIVAEKWGNIPVVLAGDFNITPQSAIYKFLS 734
            R++P  +PS    R W  A   P    E+F V+SYNIL D  A  H R LY ++    + W  RK  +  EL   + DI+C+QEVD++ D+   M+  GY+  +K RTG  VDGCA+FW++++F+L+ + SI+F + GLR+NVAQ+   E   T                S RV++ NIHVL+NP RG+ KLGQ+  L  +A  V++ W + P+VL GDFN TP+S +Y F+S
Sbjct:  156 RQRPRSKPSD--YREWEYAKTPPSPGSEKFVVLSYNILADYLANDHWRSLYFHIPRNMLSWGWRKSKLVFELSLWSADIMCLQEVDKFQDLEEEMKHRGYSAIWKMRTGNAVDGCAIFWRSNRFKLVHEESIQFNQLGLRDNVAQICVLETLLTSHTKENETPPPESSAGSHRVVICNIHVLFNPKRGDFKLGQVRTLLDKAHAVSKLWDDAPIVLCGDFNCTPKSPLYNFIS 386          
BLAST of CF835814 vs. ExPASy Swiss-Prot
Match: ANGE1_RAT (Protein angel homolog 1 OS=Rattus norvegicus GN=Angel1 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26
Identity = 79/241 (32.78%), Postives = 121/241 (50.21%), Query Frame = 3
Query:   81 LRRKPFDEPSPDVL-RHWIDADPNPISS--------DERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDILN-VMEKVGYAGCYKRRTGYNVDGCAMFWKADKFRLLEQTSIEFKEFGL----RENVAQLSAFE------MRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRARIVA--EKWGNIPVVLAGDFNITPQSAIYKFL 731
            L+  P + P  ++L R W D    P +           +F+++SYNIL      +  +LY +   + + WN R   + QE    +PDI+C+QEV  D Y++ L   +  +G+   YKRRTG   DGCA+ +K  +FRLL  + +E+   GL    R+NV  +   +      +       + V N HVLYNP RG+VKL Q+  L +    VA      + P++L GD N  P S +Y F+
Sbjct:  203 LQPPPMEIPYHEILWREWEDFSTQPDAQGLEAGDGPQFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNVGLVLLLQPLVPEGLGQVSVAPLCVANTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGDLNSVPDSPLYNFI 443          
BLAST of CF835814 vs. ExPASy Swiss-Prot
Match: ANGE1_MOUSE (Protein angel homolog 1 OS=Mus musculus GN=Angel1 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26
Identity = 79/241 (32.78%), Postives = 121/241 (50.21%), Query Frame = 3
Query:   81 LRRKPFDEPSPDVL-RHWIDADPNPISS--------DERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDILN-VMEKVGYAGCYKRRTGYNVDGCAMFWKADKFRLLEQTSIEFKEFGL----RENVAQLSAFE------MRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRARIVA--EKWGNIPVVLAGDFNITPQSAIYKFL 731
            L+  P + P  ++L R W D    P +           +F+++SYNIL      +  +LY +   + + WN R   + QE    +PDI+C+QEV  D Y++ L   +  +G+   YKRRTG   DGCA+ +K  +FRLL  + +E+   GL    R+NV  +   +      +       + V N HVLYNP RG+VKL Q+  L +    VA      + P++L GD N  P S +Y F+
Sbjct:  203 LQPPPMEIPYHEILWREWEDFSTQPDAQGLEAGDGPQFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNVGLVLLLQPLVPEGLGQVSVAPLCVANTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGDLNSVPDSPLYNFI 443          
BLAST of CF835814 vs. ExPASy Swiss-Prot
Match: ANGEL_DROME (Protein angel OS=Drosophila melanogaster GN=angel PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.737e-25
Identity = 78/235 (33.19%), Postives = 122/235 (51.91%), Query Frame = 3
Query:  102 EPSPDVLRHWIDA-------DPNPISSDERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILNVM---------EKVGYAGCYKRRTGYNVDGCAMFWKADKFRLLEQTSIEFKEFGL----RENVAQLSAFEMR--NTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRARIVAEKWG---NIPVVLAGDFNITPQSAIYKFL 731
            E S D  R W          DP+  SS   F VVSYNIL      +H  LY  + +E++ W RR++ + +EL+ L+PDI+C+QE+   FD L V+         +K+ Y   YK++TG   DGCA+ + + KF LL+  ++E  +  +    R+NVA  + F  +    + +  +V   H+L+N  R +V+  Q+       RI+ E      + P+VL GDFN  P S+  +FL
Sbjct:   41 ESSHDRNRRWTSLGNQAEGRDPHKCSS---FKVVSYNILAQDLLLEHLFLYVGIPHEFLSWQRRQQNLLRELLKLDPDILCLQEMQ--FDHLPVLVQRLRMGNGKKLAYV--YKKKTGCRTDGCAIVYDSSKFELLDHQAVELYDQAVALLNRDNVALFARFRFKKQQEQQKEFVVATTHLLFNTKRSDVRCAQV------ERILEELQSFSTDTPIVLTGDFNSLPDSSPIEFL 262          
BLAST of CF835814 vs. ExPASy Swiss-Prot
Match: ANGE2_BOVIN (Protein angel homolog 2 OS=Bos taurus GN=ANGEL2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.963e-25
Identity = 77/214 (35.98%), Postives = 114/214 (53.27%), Query Frame = 3
Query:  135 DADPNPISSDER----FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKVGYAGCYKRRTGYNVDGCAMFWKADKFRLLEQTSIEFKEFGL----RENVAQLSAFEMR--NTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRARIVA-EKWGNI-PVVLAGDFNITPQSAIYKFL 731
            D + +PI  D      FSV+SYNIL       +  LY++ R   + W+ R   I +E+   + D++C+QEV  D Y  +I   +E +GY   YK RTG   DGCA+ +K  KF LL    +EF    +    R+NV  +   + +  +  S  + V N H+LYNP RG++KL Q+  L +    VA +K G   P+V+ GDFN  P S +Y F+
Sbjct:  151 DENVDPICEDSENKFEFSVMSYNILSQDLLEDNSHLYKHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGTEIRPSLESLGYHCEYKMRTGRKPDGCAICFKHSKFSLLSVNPVEFYRRDVPLLDRDNVGLVLLLQPKIPSATSPAICVANTHLLYNPRRGDIKLTQLAMLLAEISSVAHQKDGRFCPIVMCGDFNSVPGSPLYSFI 364          
BLAST of CF835814 vs. ExPASy Swiss-Prot
Match: ANGE1_HUMAN (Protein angel homolog 1 OS=Homo sapiens GN=ANGEL1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.869e-25
Identity = 70/203 (34.48%), Postives = 108/203 (53.20%), Query Frame = 3
Query:  168 RFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDILN-VMEKVGYAGCYKRRTGYNVDGCAMFWKADKFRLLEQTSIEFKEFGL----RENVAQLSAFE------MRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRARIVA--EKWGNIPVVLAGDFNITPQSAIYKFL 731
            +F+++SYNIL      +  +LY +   + + WN R   + QE    +PDI+C+QEV  D Y++ L   +  +G+   YKRRTG   DGCA+ +K  +FRLL  + +E+   GL    R+NV  +   +      +       + V N H+LYNP RG+VKL Q+  L +    VA      + P++L GD N  P S +Y F+
Sbjct:  244 QFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFVNLMQEFQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNVGLVLLLQPLVPEGLGQVSVAPLCVANTHILYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGDLNSVPDSPLYNFI 446          
BLAST of CF835814 vs. ExPASy Swiss-Prot
Match: ANGE2_HUMAN (Protein angel homolog 2 OS=Homo sapiens GN=ANGEL2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.587e-24
Identity = 75/212 (35.38%), Postives = 113/212 (53.30%), Query Frame = 3
Query:  135 DADPNPISSDERF--SVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKVGYAGCYKRRTGYNVDGCAMFWKADKFRLLEQTSIEFKEFGL----RENVAQLSAFEMR--NTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRARIVA-EKWGNI-PVVLAGDFNITPQSAIYKFL 731
            + DP    S+ +F  SV+SYNIL       +  LY++ R   + W+ R   I +E+   + D++C+QEV  D Y  +I   +E +GY   YK RTG   DGCA+ +K  KF LL    +EF    +    R+NV  +   + +        + V N H+LYNP RG++KL Q+  L +    VA +K G+  P+V+ GDFN  P S +Y F+
Sbjct:  153 NVDPKCEDSENKFDFSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGAEIRPSLESLGYHCEYKMRTGRKPDGCAICFKHSKFSLLSVNPVEFFRPDISLLDRDNVGLVLLLQPKIPYAACPAICVANTHLLYNPRRGDIKLTQLAMLLAEISSVAHQKDGSFCPIVMCGDFNSVPGSPLYSFI 364          
BLAST of CF835814 vs. ExPASy Swiss-Prot
Match: ANGE2_DANRE (Protein angel homolog 2 OS=Danio rerio GN=angel2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.297e-24
Identity = 76/228 (33.33%), Postives = 117/228 (51.32%), Query Frame = 3
Query:  111 PDVLRHWID------ADPNPISSDER----FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFD-ILNVMEKVGYAGCYKRRTGYNVDGCAMFWKADKFRLLEQTSIEFKEFGL----RENVAQLSAFEM--RNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRARIVAEKWGN--IPVVLAGDFNITPQSAIYKFL 731
            P++ RHW D      A P+     ++    FSV+SYNIL       +  LY++     + W  R   I +EL   + DI+C+QEV  D Y   I   +E +GY   +KRRTG   DGCA+ +K ++F L+    +E+   G+    R+NV  +        +     + V N H+LYNP RG++KL Q+  L +    V++   +   PV+L GDFN  P S +Y+F+
Sbjct:  169 PELKRHWEDLSHLCKAAPSVNRGKQKWPFDFSVMSYNILSQDLLCDNTYLYRHCNPPVLDWRNRFPNIIKELEQYSADIMCLQEVQEDHYKQQIKPSLESLGYHCEFKRRTGLKPDGCAVIFKRERFSLVSCHPVEYFRRGVPLMDRDNVGLIVLLRPIDPHVSLSNICVANTHLLYNPRRGDIKLAQLAMLLAEISRVSQLPDSSVCPVLLCGDFNSVPWSPLYRFI 396          
The following BLAST results are available for this feature:
BLAST of CF835814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CCR4C_ARATH6.494e-8162.72Carbon catabolite repressor protein 4 homolog 3 OS... [more]
CCR4E_ARATH1.044e-5445.45Carbon catabolite repressor protein 4 homolog 5 OS... [more]
CCR4F_ARATH1.671e-4441.20Carbon catabolite repressor protein 4 homolog 6 OS... [more]
ANGE1_RAT2.680e-2632.78Protein angel homolog 1 OS=Rattus norvegicus GN=An... [more]
ANGE1_MOUSE2.680e-2632.78Protein angel homolog 1 OS=Mus musculus GN=Angel1 ... [more]
ANGEL_DROME1.737e-2533.19Protein angel OS=Drosophila melanogaster GN=angel ... [more]
ANGE2_BOVIN2.963e-2535.98Protein angel homolog 2 OS=Bos taurus GN=ANGEL2 PE... [more]
ANGE1_HUMAN3.869e-2534.48Protein angel homolog 1 OS=Homo sapiens GN=ANGEL1 ... [more]
ANGE2_HUMAN5.587e-2435.38Protein angel homolog 2 OS=Homo sapiens GN=ANGEL2 ... [more]
ANGE2_DANRE7.297e-2433.33Protein angel homolog 2 OS=Danio rerio GN=angel2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835814 ID=CF835814; Name=CF835814; organism=Citrus sinensis; type=EST; length=740bp
TGTGGCTCCAATCGTTCACCACACATTCCTCATCATCATCGCCGTCAACT
CGTTCTTACAGCCGTCGATGGTACAACCCTCTCCGACGTAAGCCGTTCGA
TGAGCCTTCTCCTGACGTCCTCCGCCACTGGATCGACGCTGATCCTAATC
CAATTTCATCTGACGAGAGATTCTCGGTCGTGTCATATAACATATTGGGA
GATAAAAATGCTTTCAAACATAGAGATTTATATCAAAATGTTCGGTATGA
ATACATGAAATGGAACCGTCGCAAAAGGTTAATATGCCAAGAGTTGATCG
GATTGAACCCGGATATTATCTGTATGCAAGAGGTGGACAGGTATTTTGAT
ATTCTGAATGTTATGGAGAAAGTGGGATATGCTGGTTGTTACAAGCGGCG
CACTGGGTATAACGTCGATGGTTGTGCGATGTTTTGGAAAGCTGATAAGT
TTCGGTTATTAGAGCAAACAAGCATTGAATTTAAAGAGTTTGGCCTTCGT
GAAAATGTGGCACAACTTTCCGCTTTTGAGATGCGCAACACAAAATCAAG
AAGAGTACTGGTTGGTAACATACACGTTCTTTATAATCCAAACCGAGGGG
AAGTGAAATTAGGTCAAATTTGTTTTCTTTCCTCAAGGGCACGAATCGTT
GCAGAGAAATGGGGTAATATCCCTGTTGTGCTTGCTGGTGACTTCAATAT
CACTCCTCAAAGTGCAATTTACAAGTTCTTATCATCATCA
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