CF835815

Overview
NameCF835815
Unique NameCF835815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1125 contig Csv1_Contig1125:16..589. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.205e-61
Identity = 112/162 (69.14%), Postives = 132/162 (81.48%), Query Frame = 2
Query:   95 NVASIVTPQFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGSG-SPEVSKREIAAFFAHVTHETGHLCYIEEINKSNR-YCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQGFGATI 574
            +V S+VT  FF+GIKNQA   CAGKSFYTR +FLNAA++Y  F +  + + SKREIAAFFAHVTHETGH+CYI EIN +N  YCD+ NKQ+PC PGK YYGRGP+Q++ N NYG AGK IGFDGLR P+ VA+DP +SFKTALWFWM NVH VM+QGFGATI
Sbjct:   83 SVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNVHQVMSQGFGATI 244          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 4.581e-61
Identity = 109/161 (67.70%), Postives = 126/161 (78.26%), Query Frame = 2
Query:   95 NVASIVTPQFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGSGSPEVS-KREIAAFFAHVTHETGHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQGFGATI 574
            NVA++VT  FF+GIKNQA + C GK+FYTR AFL+A  AYP F  G  EV  KREIAAFFAHVTHETGH CYI EINKSN YCD  N+Q+PC  G+ YYGRGP+Q++ N NYG AG+ IGF+GL  P  VA+D V++FKTALWFWM NVH VM QGFGATI
Sbjct:   79 NVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMPQGFGATI 239          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.283e-59
Identity = 109/162 (67.28%), Postives = 129/162 (79.63%), Query Frame = 2
Query:   95 NVASIVTPQFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGSG-SPEVSKREIAAFFAHVTHETGHLCYIEEINKSNR-YCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQGFGATI 574
            +V S+VT  FF+GIKNQA   CAGK+FYTR +FLNAA +Y  F    + + SKREIAAFFAHVTHETGH+CYI EIN ++  YCD+ NKQ+PC PGK YYGRGP+Q++ N NYG AG+ IGFDGLR P+ VA+DP +SFKTALWFWM NVH VM QGFGATI
Sbjct:   86 SVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNVHQVMLQGFGATI 247          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.287e-59
Identity = 106/160 (66.25%), Postives = 123/160 (76.88%), Query Frame = 2
Query:   95 NVASIVTPQFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGSGSPEVS-KREIAAFFAHVTHETGHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQGFGAT 571
            NVAS+VT  FF+GIKNQA + C GK+FYTR AFL+A K YP F  G  +V  KREIAAFFAH THETGH CYI EINKSN YCD   +Q+PC  G+ YYGRGP+Q++ N NYG AG+AIGFDGL  P  VA+D VV+FK ALWFWM +VH V+ QGFGAT
Sbjct:   68 NVASVVTSSFFNGIKNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVPQGFGAT 227          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 3.756e-55
Identity = 99/161 (61.49%), Postives = 123/161 (76.40%), Query Frame = 2
Query:   95 NVASIVTPQFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGSGSPEVSKREIAAFFAHVTHETGHLCYIEEINKSNR-YCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQGFGATI 574
            +V SIVT  FF+GI NQA   CAGK+FYTRD+F+NAA  +P F +    V++REIA  FAH THETGH CYIEEIN ++R YCDE N+QYPC PGK Y+GRGPIQL+ N NYGA G+++  + L  PE V+ +P V+F+T LWFWM +V PV+NQGFGATI
Sbjct:   71 SVGSIVTQAFFNGIINQAGGGCAGKNFYTRDSFINAANTFPNFANS---VTRREIATMFAHFTHETGHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRPVLNQGFGATI 228          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 5.997e-53
Identity = 104/161 (64.60%), Postives = 124/161 (77.02%), Query Frame = 2
Query:  101 ASIVTPQFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGHLCYIEEINKSNR-YCDEQN-KQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQGFGATI 574
            A I+T  F +GI +QA + CAGK+FYTRDAFL+A  +Y  FG  GS + SKREIAA FAH THETGH CYIEEI+ +++ YCDE++  QYPC   K Y+GRGPIQL+ N NYG AG A  FDGL APETV+ D VVSFKTALW+WM +V PV+NQGFGATI
Sbjct:   69 ADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRPVINQGFGATI 229          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.131e-51
Identity = 101/164 (61.59%), Postives = 121/164 (73.78%), Query Frame = 2
Query:   95 NVASIVTPQFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGHLCYIEEIN-KSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP--VMNQGFGATI 574
            +VASIVTP+FF  +  QA   CA K FYTRDAFL AA  YP FG +GS + SKREIAAFFAH  HET   CYIEEI+  S  YCDE + Q+PC+ GK YYGRGP+Q++ N NYG AG++IGFDGL  P+ VA+ PV++F+TALW+W  NVH   V  QGFGATI
Sbjct:   67 SVASIVTPEFFAALVAQADDGCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIKFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNVHDAFVSGQGFGATI 230          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.638e-50
Identity = 102/163 (62.58%), Postives = 122/163 (74.85%), Query Frame = 2
Query:   95 NVASIVTPQFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGHLCYIEEINKS--NRYCDEQNK-QYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQGFGAT 571
            +V+ IV+  FFDGI  QAAASC GK+FYTR AFL+A    P+FG+ GS + +KREIAAFFAH++HET +LC+IEE +    + YCD+    QYPC  GK YYGRGP+QL+ N NY  AG+AIGFDGL  PE VA D   SFK A+WFWMTNVH VMNQGFGAT
Sbjct:   86 SVSDIVSQAFFDGIIGQAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNVHSVMNQGFGAT 246          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 8.961e-49
Identity = 100/165 (60.61%), Postives = 123/165 (74.55%), Query Frame = 2
Query:   98 VASIVTPQFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGSG-SPEVSKREIAAFFAHVTHETGHLCYIEEIN-KSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWM-TNVHPVM---NQGFGATI 574
            V+ IVT +F+DGI +QAAA+C GKSFYTR  FL A  AYP FG+  + E  KREIAA+FAHVTHETGHLCYIEE +  +N YC E ++QYPC P K Y+GRGP+QL+ N NY  AGK + FDGL  P+ V +DP++SFKT+LWFW+   V  V+   NQGFGATI
Sbjct:   46 VSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQE-SQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIRKGVQYVILDPNQGFGATI 209          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.100e-36
Identity = 76/160 (47.50%), Postives = 104/160 (65.00%), Query Frame = 2
Query:   98 VASIVTPQFFDGI-KNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT 532
            V+SIV+ Q +  +  ++  A+C  + FYT  +F+ AA  +P+F + G  +  KRE+AAF A ++HET               LCY EEIN  + YCD  +KQ+PC PGK Y+GRGPIQ++ N NYG AG+A+GFDGLR PE VA    ++F+TALWFWMT
Sbjct:   49 VSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMT 208          
The following BLAST results are available for this feature:
BLAST of CF835815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_ORYSJ1.205e-6169.14Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE4.581e-6167.70Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI5_ORYSJ3.283e-5967.28Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE4.287e-5966.25Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_BRANA3.756e-5561.49Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI4_PHAVU5.997e-5364.60Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI6_ORYSJ1.131e-5161.59Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU3.638e-5062.58Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIT_DIOJA8.961e-4960.61Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI10_ORYSJ5.100e-3647.50Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835815 ID=CF835815; Name=CF835815; organism=Citrus sinensis; type=EST; length=574bp
AAAAATGGCTCCTCTTAACATGAAAAAAAATATTGTAACCTTTGCTCTTG
TGGGCATTCTTGCCCTAGCTTTTCCCACCAAAGTAATGTGTCAAAATGTT
GCTAGCATTGTGACTCCCCAGTTCTTCGACGGCATAAAGAATCAGGCAGC
CGCGAGTTGTGCCGGCAAGAGCTTCTACACGAGAGATGCGTTTCTGAATG
CTGCCAAGGCTTATCCTCAATTTGGTAGCGGCTCTCCTGAAGTTTCGAAG
CGTGAGATTGCTGCATTTTTTGCACACGTCACTCATGAAACTGGACATTT
GTGCTACATAGAAGAGATTAACAAGTCCAACCGGTACTGTGATGAACAAA
ACAAACAGTACCCATGTGTTCCCGGAAAGTTCTACTACGGCCGTGGACCG
ATCCAACTCACCGGAAATGGAAACTACGGAGCTGCCGGAAAAGCCATCGG
GTTTGACGGATTAAGAGCTCCGGAAACGGTGGCCAAGGACCCCGTTGTGT
CATTTAAGACTGCCTTGTGGTTTTGGATGACCAATGTGCACCCAGTTATG
AACCAAGGTTTTGGTGCAACAATT
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