CF835819

Overview
NameCF835819
Unique NameCF835819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF835819 vs. ExPASy Swiss-Prot
Match: Y5175_ARATH (UPF0706 protein At5g01750 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 45/169 (26.63%), Postives = 81/169 (47.93%), Query Frame = 3 
Query:   27 GGFVVTDCSQKIIFRVDGCGVLGTKGELVVRHADGDAVVLIRRKGGVVEALSIHKKWKGYAFDYEGSKKLVFTLKEPPSSSCLVRNSSIRISTETTARSSNFEVKGYFPDRDCII-VDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFVVGVIATLDYIYGE 530
            G FV+TD +  ++F+V    V G   + V+    G  VV +R K      +S+H +W+ +       + L++T+K   S   L     + +      +  +F VKG + +R C++    S  IVAQ+  K  ++ +   KD + + V P +D AF+  ++  LD +  E
Sbjct:   52 GNFVITDVNGNLLFKVKE-PVFGLHDKRVLLDGSGTPVVTLREK-----MVSMHDRWQVFRGGSTDQRDLLYTVKRS-SMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNRE 213
The following BLAST results are available for this feature:
BLAST of CF835819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5175_ARATH9.042e-1126.63UPF0706 protein At5g01750 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01P02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835819 ID=CF835819; Name=CF835819; organism=Citrus sinensis; type=EST; length=731bp
ACGTGAGGCCACACGTAGTCAATGGAGGAGGATTTGTGGTAACAGATTGC
AGCCAAAAGATCATTTTCAGGGTTGACGGCTGCGGTGTTCTTGGTACAAA
AGGGGAGCTGGTTGTTAGACATGCTGATGGAGATGCCGTCGTTCTCATCC
GTCGCAAGGGAGGGGTGGTTGAGGCCCTCAGCATTCATAAAAAATGGAAG
GGTTACGCTTTTGACTATGAAGGATCTAAGAAGTTAGTGTTTACCTTAAA
AGAACCACCCAGCAGTTCATGTTTAGTGAGGAACAGTTCCATAAGGATCT
CCACTGAAACTACAGCCAGAAGCAGCAACTTTGAGGTCAAAGGTTACTTC
CCAGATAGAGACTGCATCATTGTTGATCCCAGTGGCAACATTGTAGCTCA
GATTGGAGTGAAAAAAGAAATAGAAGACTTGATGGAAAGCAAGGATCTAT
ATCACATAGTGGTGAAACCGGGGATTGATCAGGCCTTTGTTGTTGGAGTC
ATTGCCACTCTCGATTACATTTATGGCGAATCTACTAGGTACTGATCAAT
CAGAACTTTTACCAACTAATGTCACTGAAACTATGTAAAATCATGGGAAA
ATTGCGTCCCCTTCAAGCTGTGTTAAATTTAATTATGGTTTTTTTTTCTT
CTTCCGTTGTTTTTATATGTGTCAAGCTTGATGGTGTATTGTATCTCTTT
TGTACATGTATTATATACTGTCGATGAATTG
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