CF835823

Overview
NameCF835823
Unique NameCF835823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835823_ssr197 microsatellite CF835823_ssr197:197..208. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4353 contig Csv1_Contig4353:3..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 2.677e-44
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 2
Query:  191 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   46 GDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147          
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 3.496e-44
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 2
Query:  221 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   57 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 4.566e-44
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 2
Query:  221 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            S+ETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   47 SVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138          
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 5.963e-44
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 2
Query:  221 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            SIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   54 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.963e-44
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 2
Query:  191 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            GD        ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   36 GDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137          
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 5.963e-44
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 2
Query:  191 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            GD        ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   47 GDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 177.563 bits (449), Expect = 5.963e-44
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 2
Query:  191 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 1.017e-43
Identity = 91/102 (89.22%), Postives = 93/102 (91.18%), Query Frame = 2
Query:  191 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   44 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 1.017e-43
Identity = 91/102 (89.22%), Postives = 93/102 (91.18%), Query Frame = 2
Query:  191 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 2.960e-43
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 2
Query:  221 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            S ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   41 STETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 132          
The following BLAST results are available for this feature:
BLAST of CF835823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_GOSHI2.677e-4490.20Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B1_MEDTR3.496e-4498.91Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B3_MEDTR4.566e-4497.83Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B_CAPAN5.963e-4498.91Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B3_SOLLC5.963e-4489.22Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B1_ARATH5.963e-4489.22Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B11_ARATH5.963e-4489.22Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B7_ARATH1.017e-4389.22Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH1.017e-4389.22Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]
H2B9_ARATH2.960e-4397.83Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01P06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835823 ID=CF835823; Name=CF835823; organism=Citrus sinensis; type=EST; length=716bp
CTCCCGTATTCACCGAATCTAACAATTTGTCTTCTACTTTCAATTCCTCG
CGAACCCACAGTTTCTTCTGACGATGGCACCAAAGGCGGAGAAGAAGCCA
GCGGAGGAGAAGAAGACACCGGTAGCGGAGAAGGCGCCTGCCGAGAAGAA
GCCGAAGGCCGGGAAGAAACTTCCGAAGGAAGCCGCAGCGGGTGACAAGA
AGAAGAAGCGCACGAAGAAGAGCATTGAGACGTACAAGATCTACATATTC
AAAGTCCTGAAGCAAGTCCATCCAGATATCGGAATCTCGAGCAAGGCTAT
GGGAATTATGAACAGTTTCATCAACGATATTTTCGAGAAGCTTGCTCAGG
AATCTTCCAGGCTGGCAAGGTACAACAAGAAGCCGACGATAACTTCTCGT
GAAATCCAGACCGCTGTGAGACTTGTGCTTCCTGGTGAGCTGGCTAAGCA
CGCCGTTTCTGAGGGTACCAAGGCGGTTACCAAGTTCACCTCGTCTTAAA
TTAGGGTTAGGTTTCACTATGTGCGATGAAATTGGGGTTAGTGATGTTTG
CTGTGTCCTTTCTTGGAGTAATAATGTAAGTAGTTAGTATTAATGAAATG
GCATGGTGCTGATAGAAGTGACTTATATTGCCTTATTATGTTCGATCAAT
GTGTTGATATCGGATTTTAGCAACTGGTTTTATAAGATATGGTCTTAAAT
AAAAAAAAAAAAAAAA
back to top