CF835825

Overview
NameCF835825
Unique NameCF835825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1177 contig Csv1_Contig1177:1..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835825 vs. ExPASy Swiss-Prot
Match: PTPM1_MOUSE (Protein-tyrosine phosphatase mitochondrial 1 OS=Mus musculus GN=Ptpmt1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.350e-25
Identity = 71/190 (37.37%), Postives = 103/190 (54.21%), Query Frame = 3
Query:  120 AKRALVGAG-ARILFYPTLLYNVFRNKIQ--AEFRWWDEVDQFLLLGAVPFPKDVPRLK-QLGVGGVITLNEPYETLV---PSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKLAITA 668
            A  A + AG AR+LFYPTLLY VFR +++  A   W+  +D  +LLGA+P      RL     V GVIT+NE YET      S  +   G++ L + T D    P+  ++ + V F       G+  YVHCKAGR RS T+V  YL++  + +P  A+E +   R  + + PSQ + ++EF +   A  A
Sbjct:    2 AASAWLEAGLARVLFYPTLLYTVFRGRVRGPAHRDWYHRIDHTVLLGALPLKNMTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQFALKYQALGQCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLEVLKEFHKEITARAA 191          
BLAST of CF835825 vs. ExPASy Swiss-Prot
Match: PTPM1_RAT (Protein-tyrosine phosphatase mitochondrial 1 OS=Rattus norvegicus GN=Ptpmt1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.928e-25
Identity = 72/190 (37.89%), Postives = 102/190 (53.68%), Query Frame = 3
Query:  120 AKRALVGAG-ARILFYPTLLYNVFRNKI--QAEFRWWDEVDQFLLLGAVPFPKDVPRLK-QLGVGGVITLNEPYETLV---PSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKLAITA 668
            A  A + AG AR+LFYPTLLY VFR ++   A   W+  +D  +LLGA+P      RL     V GVIT+NE YET      S  +   G++ L + T D    P+  ++ R V F       G+  YVHCKAGR RS T+V  YL++  + +P  A+E +   R  + + PSQ + ++EF +   A  A
Sbjct:    2 AASAWLEAGLARVLFYPTLLYTVFRGRVGGPAHRDWYHRIDHTVLLGALPLRSMTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKNVGVEQLRLSTVDMTGVPTLANLHRGVQFALKYQSLGQCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLEILKEFHKEIAARAA 191          
BLAST of CF835825 vs. ExPASy Swiss-Prot
Match: PTPM1_HUMAN (Protein-tyrosine phosphatase mitochondrial 1 OS=Homo sapiens GN=PTPMT1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.650e-23
Identity = 68/184 (36.96%), Postives = 101/184 (54.89%), Query Frame = 3
Query:  120 AKRALVGAG-ARILFYPTLLYNVFRNKI--QAEFRWWDEVDQFLLLGAVPFPKDVPRLKQ-LGVGGVITLNEPYETLV---PSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQR 650
            A  AL+ AG AR+LFYPTLLY +FR K+  +A   W+  +D  +LLGA+P      +L Q   V GVIT+NE YET      S  +   G++ L + T D    P+  ++++ V F       G+  YVHCKAGR RS T+V  YL++    +P  A+  +   R  + + P Q   ++EF ++
Sbjct:    2 AATALLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQLVQDENVRGVITMNEEYETRFLCNSSQEWKRLGVEQLRLSTVDMTGIPTLDNLQKGVQFALKYQSLGQCVYVHCKAGRSRSATMVAAYLIQVHKWSPEEAVRAIAKIRSYIHIRPGQLDVLKEFHKQ 185          
BLAST of CF835825 vs. ExPASy Swiss-Prot
Match: PTPM1_DROME (Protein-tyrosine phosphatase mitochondrial 1-like protein OS=Drosophila melanogaster GN=Plip PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 66/184 (35.87%), Postives = 100/184 (54.35%), Query Frame = 3
Query:  147 ARILFYPTLLYNVFRNKIQAEFRWWDEVDQFLLLGAVPFPKDVPRL-KQLGVGGVITLNEPYETLVPSS---LYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIH------------SNSCAGK---TTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEF 641
            AR+ FYPTLLYNV   K  A   W+D +D+ ++LGA+PF      L ++  +  V+++NE YE    S+    +   GI+ L + T D   +P+   + R V+FI+            S+S   +   + YVHCKAGR RS T+V CYL+      P  A++++R  RP +LL   QW A++ F
Sbjct:    9 ARVSFYPTLLYNVLMEKASAR-NWYDRIDEHVILGALPFRSQANDLIEKENMKAVVSMNEDYELTAFSNNTEKWRKLGIEFLQLATTDIFESPNQEKLFRGVEFINKFLPLKQRIGGLSSSYQPENVGSVYVHCKAGRTRSATLVGCYLMMKNGWTPDQAVDHMRKCRPHILLHTKQWDALRLF 191          
The following BLAST results are available for this feature:
BLAST of CF835825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PTPM1_MOUSE1.350e-2537.37Protein-tyrosine phosphatase mitochondrial 1 OS=Mu... [more]
PTPM1_RAT3.928e-2537.89Protein-tyrosine phosphatase mitochondrial 1 OS=Ra... [more]
PTPM1_HUMAN1.650e-2336.96Protein-tyrosine phosphatase mitochondrial 1 OS=Ho... [more]
PTPM1_DROME9.055e-2235.87Protein-tyrosine phosphatase mitochondrial 1-like ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01P07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835825 ID=CF835825; Name=CF835825; organism=Citrus sinensis; type=EST; length=748bp
GGAATCAGAGAACAGTCTGAAGGCCCAGTGTTGGTGAGATGAAGATCGAG
GAGCTGGACGACGTGGAGCATGATCGAAACGACGACGGTTGCCGTACGAC
GCAGATAGTGAAGGCTGACGCTAAGAGAGCGTTGGTCGGGGCGGGTGCTC
GGATCCTCTTCTACCCGACCCTTTTGTATAATGTATTTCGTAACAAAATC
CAAGCTGAGTTCAGATGGTGGGACGAAGTCGATCAGTTTCTTCTACTTGG
CGCGGTGCCGTTTCCTAAGGACGTTCCACGGTTGAAGCAACTTGGGGTCG
GTGGAGTCATCACTCTCAATGAACCCTATGAAACTCTGGTTCCATCTTCC
TTGTATCATGCCCATGGGATCGACCACTTAGTGATTCCCACAAGAGATTA
TCTCTTTGCTCCTTCTTTTGTTGATATTAGGAGAGCTGTGGACTTCATTC
ATAGTAATTCATGTGCTGGTAAAACGACTTATGTTCACTGTAAAGCTGGC
CGCGGAAGGAGCACAACCATTGTGCTATGCTATTTGGTAGAGTACAAGCA
CATGGCACCGGCTGCAGCCCTGGAATATGTGAGGTGTAGAAGGCCTCGAG
TGTTACTGGCTCCCTCACAGTGGAAGGCAGTTCAGGAATTCAGCCAGAGA
AAACTGGCTATTACAGCTCCCTATTCTCCATCCGTTGATGCAGTGCTAAT
AACAAAAGCAGATCTTGAAGGATATCATGGCACCTGTGATGATACTAC
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