CF835830

Overview
NameCF835830
Unique NameCF835830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835830_ssr267 microsatellite CF835830_ssr267:267..284. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835830_ssr672 microsatellite CF835830_ssr672:672..683. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835830 vs. ExPASy Swiss-Prot
Match: COMA2_BACSU (Putative esterase comA2 OS=Bacillus subtilis GN=yuxO PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.395e-12
Identity = 38/105 (36.19%), Postives = 62/105 (59.05%), Query Frame = -2 
Query:  321 LKAIGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAH--MASGFKRVAGIQLTINHLKSAELGDLVRAVAAPINLGKTIQVWQVRLWKVKE 629
            L+A+G E+ E T ER +    V   + QPF  LHGG S  +AE+ AS GA   +    +   G+++  NHLKS + G  V+A+A P+++G+T  V+ + ++  +E
Sbjct:    8 LEALGIEIVENTAERCVAVMPVDHRTVQPFGYLHGGASVALAETAASAGAQNLIDHTTQACVGLEINANHLKSVKEG-TVKAIAEPVHIGRTTIVYHIHIYDEQE 111
The following BLAST results are available for this feature:
BLAST of CF835830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COMA2_BACSU7.395e-1236.19Putative esterase comA2 OS=Bacillus subtilis GN=yu... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01P11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835830 ID=CF835830; Name=CF835830; organism=Citrus sinensis; type=EST; length=807bp
TTTTTTTTTTTTTTTTAAAAACACATAAATGTAGGCATTGCATTGCGTTG
ACTACAACGTACAGTGAAATTTGAAAAATTGAAGAAAAAAGGAAAATAAA
AAAAGAGAAATTATACATATATGATATATATGTATGTATATCACAATTTG
CTGGCAGAGTTCTTGAGAGCATCTCCTGCATGTTTAGCATGATCAGGGAC
AGGGAGGTTGCATAGGAGAGTAACGGTGGAGGAAGAAATCATAATAGAAG
AAGAAGTAGAATTATTATGATGATGATGATGATGATCAGCATCATGATCG
CGACCATCATCAGATTGTACTTCTTTTACTTTCCAAAGACGAACTTGCCA
AACCTGAATGGTCTTTCCAAGATTGATGGGGGCGGCAACAGCACGGACAA
GGTCGCCAAGCTCAGCGCTCTTCAAGTGATTGATGGTCAGCTGAATCCCA
GCCACTCTTTTGAAACCAGATGCCATGTGCGCCCCCATGCTCGCCAATGA
CTCTGCTATCAACGCCGATACTCCCCCATGCAACACCTTAAATGGCTGAC
ACGAGTTTTGGGTAACCCGGAAGCAGCCGATGATTCTTTCAGGGGTTAAT
TCCTCAAGTTCAAACCCAATTGCCTTCAACGGAGCATCCGGAACTGCAAT
TCTCTTTCTCTGCTTTGAATTTGATGATGATGAATGCTCCATGCTACAGT
GTTGAACGCTCAGCGCTGCTGCTGGTGGGTAGTAGGTACAACAACCCAAA
CGAGCAACGTGTTTTTGTTTAATTAGTACAAAGAGTCTTATTGCTCATTT
GCTCTTA
back to top