CF835834

Overview
NameCF835834
Unique NameCF835834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835834_ssr110 microsatellite CF835834_ssr110:110..121. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835834_ssr170 microsatellite CF835834_ssr170:170..181. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6180 contig Csv1_Contig6180:19..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 3.354e-96
Identity = 174/217 (80.18%), Postives = 188/217 (86.64%), Query Frame = 3
Query:  108 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAGN 758
            LKK+KR                      RKLI+ R +QY+KEY E++KELI LKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYG+PNLKSVKELIYKRGYGKLN QRIALTDNSI+EQALG+HGIIC EDLIHEILTVGPHFKEANNFLWPF+L+APLGGLKKKRNHYVEGGDAGN
Sbjct:   13 LKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGN 229          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 7.471e-96
Identity = 169/189 (89.42%), Postives = 182/189 (96.30%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAGN 758
            RKLI+ R +QYAKEY E+  ELIRLKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSVKELIYKRGYGKLN QRIALTDNSI++QALG+HGIIC+EDLIHEI+TVGPHFKEANNFLWPF+L+APLGGLKKKRNHYVEGGDAGN
Sbjct:   41 RKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGN 229          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 9.758e-96
Identity = 170/217 (78.34%), Postives = 189/217 (87.10%), Query Frame = 3
Query:  108 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAGN 758
            LKK+KR                      RKLI+NR KQY+KEY E+++ELI+LKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSVKELIYKRG+GKLN QR ALTDNSI++Q LG+HGIIC+EDLIHEI+TVGPHFKEANNFLWPF+L+APLGG+KKKRNHYVEGGDAGN
Sbjct:   15 LKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGN 231          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.989e-73
Identity = 130/189 (68.78%), Postives = 155/189 (82.01%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAGN 758
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPFKL +P GG+KKK  H+VEGGDAGN
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGN 234          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 3.989e-73
Identity = 131/189 (69.31%), Postives = 154/189 (81.48%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAGN 758
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS+I ++LG+ GIICMEDLIHEI TVG  FKEANNFLWPFKL +P GG+KKK  H+VEGGDAGN
Sbjct:   69 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGN 257          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.989e-73
Identity = 130/189 (68.78%), Postives = 155/189 (82.01%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAGN 758
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPFKL +P GG+KKK  H+VEGGDAGN
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGN 234          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.989e-73
Identity = 130/189 (68.78%), Postives = 155/189 (82.01%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAGN 758
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPFKL +P GG+KKK  H+VEGGDAGN
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGN 235          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.989e-73
Identity = 130/189 (68.78%), Postives = 155/189 (82.01%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAGN 758
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPFKL +P GG+KKK  H+VEGGDAGN
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGN 235          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 6.804e-73
Identity = 130/189 (68.78%), Postives = 154/189 (81.48%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAGN 758
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS++ ++LG+ GIICMEDLIHEI TVG  FKEANNFLWPFKL +P GG+KKK  H+VEGGDAGN
Sbjct:   59 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGN 247          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL7_CHICK (60S ribosomal protein L7 OS=Gallus gallus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.161e-70
Identity = 126/189 (66.67%), Postives = 152/189 (80.42%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAGN 758
            RK+IY R K Y KEY    ++ IR+ R A+  G +YV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV +LIYKRGYGK+NK+RIALTDNS+I + LG+ GIICMED+IHEI TVG +FK  NNFLWPFKL +P GG+KKK  H+VEGGDAGN
Sbjct:   45 RKIIYERAKAYHKEYRHMYRQEIRMARMARKAGNYYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVHDLIYKRGYGKINKKRIALTDNSLIRKRLGKLGIICMEDVIHEIYTVGKNFKVVNNFLWPFKLSSPRGGMKKKTIHFVEGGDAGN 233          
The following BLAST results are available for this feature:
BLAST of CF835834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL72_ARATH3.354e-9680.1860S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL73_ARATH7.471e-9689.4260S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL74_ARATH9.758e-9678.3460S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL7_PONAB3.989e-7368.7860S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_MOUSE3.989e-7369.3160S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_MACFA3.989e-7368.7860S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_HUMAN3.989e-7368.7860S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
RL7_BOVIN3.989e-7368.7860S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_RAT6.804e-7368.7860S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_CHICK3.161e-7066.6760S ribosomal protein L7 OS=Gallus gallus GN=RPL7 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835834 ID=CF835834; Name=CF835834; organism=Citrus sinensis; type=EST; length=760bp
CGAAGCCAGAACCCCTCCGTGAAGAAGATAGATCTAAAAGACCTCTAAGA
ACAAATTGAACCAAAGAGATGGCTGAAGCAGCAGCTGTTGTGGTACCAGA
GTCAGTGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAAGA
AGCAGGAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGCTC
ATTTACAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAAAA
AGAACTCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTATG
TCAACCCAGAAGCTAAGCTTTTGTTCATTATCAGGATTCGCGGTATCAAT
GCTGTTGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGACA
GATTTTTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATATGC
TGCACAGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAGAGT
GTCAAAGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCAGAG
GATTGCTTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAGCATG
GAATTATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTCCT
CACTTCAAGGAGGCAAACAACTTCCTATGGCCCTTCAAGCTNCAGGCACC
ATTGGGTGGCCTGAAGAAGAAGAGGAACCACTATGTTGAAGGCGGTGATG
CAGGAAACCG
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