CF835836

Overview
NameCF835836
Unique NameCF835836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835836_ssr79 microsatellite CF835836_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7034 contig Csv1_Contig7034:787..1479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.001e-56
Identity = 103/144 (71.53%), Postives = 118/144 (81.94%), Query Frame = -1
Query:  272 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMG---RKVWGVDSMVSFVGAIH 694
            G+E EKDYPY G+DG  CKFDKSKI A+V NF V+S +E Q++ANL+KHGPLA+GI A +MQTYIGGVSCPYI G++LDHG L VGYG+SGFAPIR K KP+WIIKN WGENWGENGYYKIC G   R   GVDSMVS V A+H
Sbjct:  225 GLESEKDYPYTGSDG-KCKFDKSKIVASVQNFSVVSVDEAQISANLIKHGPLAIGINAAYMQTYIGGVSCPYICGRHLDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGENGYYKICRGSNVRNKCGVDSMVSTVSAVH 367          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 4.651e-54
Identity = 96/139 (69.06%), Postives = 113/139 (81.29%), Query Frame = -1
Query:  278 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSFVGA 694
            G+ REKDYPY G DGGSCK D+SKI A+VSNF V+S  EDQ+AANL+K+GPLAV I A +MQTYIGGVSCPYI  + L+HG L VGYGS+GF+  R K KP+WIIKN WGE+WGENG+YKIC GR + GVDS+VS V A
Sbjct:  220 GLMREKDYPYTGTDGGSCKLDRSKIVASVSNFSVVSINEDQIAANLIKNGPLAVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGESWGENGFYKICKGRNICGVDSLVSTVAA 358          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.937e-53
Identity = 96/139 (69.06%), Postives = 114/139 (82.01%), Query Frame = -1
Query:  278 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSFVGA 694
            G+ +E+DYPY G DG +CK DKSKI A+VSNF VIS +E+Q+AANLVK+GPLAV I A +MQTYIGGVSCPYI  + L+HG L VGYG++G+AP RFK KP+WIIKN WGE WGENG+YKIC GR + GVDSMVS V A
Sbjct:  223 GLMKEEDYPYTGKDGKTCKLDKSKIVASVSNFSVISIDEEQIAANLVKNGPLAVAINAGYMQTYIGGVSCPYICTRRLNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGETWGENGFYKICKGRNICGVDSMVSTVAA 361          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.160e-51
Identity = 96/140 (68.57%), Postives = 110/140 (78.57%), Query Frame = -1
Query:  278 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKY-LDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSFVGA 694
            GV +EKDY Y G DG SCKFDKSK+ A+VSNF V++ +EDQ+AANLVK+GPLAV I A WMQTY+ GVSCPY+  K  LDHG L VG+G   +APIR K KP+WIIKN WG+NWGE GYYKIC GR V GVDSMVS V A
Sbjct:  220 GVVQEKDYAYTGRDG-SCKFDKSKVVASVSNFSVVTLDEDQIAANLVKNGPLAVAINAAWMQTYMSGVSCPYVCAKSRLDHGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVDSMVSTVAA 358          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: PAPA5_CARPA (Cysteine proteinase (Fragment) OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 69/95 (72.63%), Postives = 78/95 (82.11%), Query Frame = -1
Query:  263 GPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSFVGAIHTPS 547
            GPLAV I A +MQTYIGGVSCPYI  + L+HG L VGYGS+G+APIR K KP+W+IKN WGENWGENGYYKIC GR + GVDSMVS V A+HT S
Sbjct:    1 GPLAVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGYAPIRLKEKPYWVIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAAVHTTS 95          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.545e-23
Identity = 57/135 (42.22%), Postives = 72/135 (53.33%), Query Frame = -1
Query:  290 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVS 694
            G++ E  YPY    G  C F+ + I A +SNF +I   E  MA  +V  GPLA+   AV  Q YIGGV         LDHG L VGY +     I  K  P+WI+KN WG +WGE GY  +  G+   GV + VS
Sbjct:  207 GIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKN--TIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVS 339          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = -1
Query:  290 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVI-SFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPY---IWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVS 694
            G+E E +YPY  A    C F+++     V+ F  +    E  M   L+ +GP+++GI A  MQ Y GGVS P+      K LDHG L VGYG S + P   K  P+WI+KN WG  WGE GYY++  G    GV  M +
Sbjct:  473 GLEYEAEYPYK-AKKNQCHFNRTLSHVQVAGFVDLPKGNETAMQEWLLANGPISIGINANAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDY-PNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGVSEMAT 609          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 55/140 (39.29%), Postives = 71/140 (50.71%), Query Frame = -1
Query:  290 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYI-----WGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVS 694
            G+E E DY Y G    SC F   K    +++   +S  E ++AA L K GP++V I A  MQ Y  G+S P       W   +DH  L VGYG+    P       FW IKN WG +WGE GYY +  G    GV++M S
Sbjct:  350 GLETEDDYSYQG-HMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPW--LIDHAVLLVGYGNRSDVP-------FWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMAS 479          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 48/142 (33.80%), Postives = 75/142 (52.82%), Query Frame = -1
Query:  272 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFE-EDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSFVGAIH 694
            G+  E DYPY G  G  CK D  K A +VS+ +   F+ E+ +   L+  GP+A+ I A  + TY  G+   +     L+H  L VGYG+ G       G  +W +KN WG +WGE+GY+++       G+++ ++    IH
Sbjct:  205 GLMEEIDYPYQGTKG-VCKIDNKKFALSVSSCKRYIFQNEENLKKELITMGPIAMAIDAASISTYSKGI-IHFCENLGLNHAVLLVGYGTEG-------GVSYWTLKNSWGSDWGEDGYFRVKRNINACGLNNQLAASATIH 337          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 50/140 (35.71%), Postives = 73/140 (52.14%), Query Frame = -1
Query:  290 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYI-----WGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVS 694
            G+E E DY Y G    +C F        +++   +S  E+++AA L + GP++V I A  MQ Y  G++ P+      W  ++DH  L VGYG+           P+W IKN WG +WGE GYY +  G    GV++M S
Sbjct:  328 GLETEDDYGYQG-HVQTCNFSAQMAKVYINDSVELSRNENKIAAWLAQKGPISVAINAFGMQFYRHGIAHPFRPLCSPW--FIDHAVLLVGYGNRS-------NIPYWAIKNSWGSDWGEEGYYYLYRGSGACGVNTMAS 457          
The following BLAST results are available for this feature:
BLAST of CF835836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
CYSP1_MAIZE1.001e-5671.53Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
A494_ARATH4.651e-5469.06Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
RD19A_ARATH3.937e-5369.06Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
CYSP_PEA2.160e-5168.57Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
PAPA5_CARPA3.029e-3772.63Cysteine proteinase (Fragment) OS=Carica papaya PE... [more]
CYSP1_DICDI5.545e-2342.22Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CPR1_DROME1.670e-1941.01Putative cysteine proteinase CG12163 OS=Drosophila... [more]
CATF_HUMAN9.162e-1839.29Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CATV_NPVAH7.756e-1733.80Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
CATF_MOUSE1.728e-1635.71Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835836 ID=CF835836; Name=CF835836; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTTTTTTTTTTCTTAAAAAAAAAAAATATTAATACCCTCTTCAA
TAACAATTCTGGAGCATGGTTAACTATAAAATAAATAAATATTACTTTCT
GACATGACATTTGCTTAAATATTACAAAAGCATAAAAAGTTCTTGCCTCC
CCCCAGGCATGTAGGCATCGTTATAATTGCAAACGGATTTTTAAAAGGAT
TTCCTATAATATCTAGGGACAAAAGCTCCCCTTGCCTAACACAACCCCCA
TAATGTCTAGCTTGAGGGTGTATGGATAGCACCTACAAATGAAACCATGG
AGTCCACCCCCCAAACTTTGCGACCCATGCAAATCTTATAATATCCATTC
TCCCCCCAGTTCTCTCCCCAGAAGTTCTTTATGATCCAAAAAGGCTTCCC
CTTGAATCTGATCGGGGCGAAACCTGAGGATCCATACCCCACAAAAAGCC
CTCCATGATCCAAATACTTCCCCCAAATGTATGGGCATGAAACCCCCCCA
ATATATGTTTGCATCCAAACGGCTTTGATACCCACTGCCAAAGGGCCATG
TTTCACCAAATTTGCAGCCATTTGATCTTCCTCAAAGGAAATAACCCTGA
AATTAGATACCGCTGCCGCAATTTTGCTTTTGTCAAATTTGCAGGAACCC
CCGTCGGCCCCAGGGTAAGGGTAATCCTTTTCTCGCTCAACCCC
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