CF835841

Overview
NameCF835841
Unique NameCF835841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835841_ssr150 microsatellite CF835841_ssr150:150..161. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2404 contig Csv1_Contig2404:159..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835841 vs. ExPASy Swiss-Prot
Match: ITH5_CUCMA (Inhibitor of trypsin and hageman factor OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.444e-20
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = -2
Query:  195 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRIG 392
            CP KSSWP LVG  G VA AIIE++NP V A++L EGTPVTKD+R +RVR+WVNK+G V+  PRIG
Sbjct:    3 CPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPPRIG 68          
BLAST of CF835841 vs. ExPASy Swiss-Prot
Match: BGIA_MOMCH (Glu S.griseus protease inhibitor OS=Momordica charantia PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.812e-15
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = -2
Query:  195 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRIG 392
            C  K SWP+LVG  G  A A+IE+ENP V A+++  G+PVT D+R DRVRVWV ++G V R P IG
Sbjct:    3 CQGKRSWPQLVGSTGAAAKAVIERENPRVRAVIVRVGSPVTADFRCDRVRVWVTERGIVARPPAIG 68          
BLAST of CF835841 vs. ExPASy Swiss-Prot
Match: ICI_LINUS (Proteinase inhibitor OS=Linum usitatissimum PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.367e-15
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = -2
Query:  198 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRI 392
            CP K++WPELVGK+G +AAA +E+EN  VHAIVL EG+ +TKD+R DRV V VN  G V  VP I
Sbjct:    4 CPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHI 68          
BLAST of CF835841 vs. ExPASy Swiss-Prot
Match: HPI_HEVBR (Protease inhibitor HPI OS=Hevea brasiliensis GN=PI1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = -2
Query:  195 AFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRIG 401
            A  CP K+SWPELVG NG++AA II+ EN  V AIV+ EG P+T+D   +RVRV+V++   V +VP IG
Sbjct:    2 ASQCPVKNSWPELVGTNGDIAAGIIQTENANVKAIVVKEGLPITQDLNFNRVRVFVDENRVVTQVPAIG 70          
BLAST of CF835841 vs. ExPASy Swiss-Prot
Match: ATSI_AMACA (Trypsin/subtilisin inhibitor OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = -2
Query:  198 AFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRI 401
            A +CP K  WPELVG+ G  AAAIIE+ENP V +IV  E +  TKD+R DRV V V+  G V+R PR+
Sbjct:    1 ARECPGKQEWPELVGEYGYKAAAIIERENPNVRSIVKHERSGFTKDFRCDRVWVVVDSTGVVVRTPRV 68          
BLAST of CF835841 vs. ExPASy Swiss-Prot
Match: ICI1_SOLPE (Wound-induced proteinase inhibitor 1 OS=Solanum peruvianum PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = -2
Query:  198 DGPNLV--MSAFD----CPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRI 425
            DGP ++  +  F+    C  K  WPEL+G     A  IIEKENP +  I +LL G+PVTKD+R DRVR++VN  G V+++PR+
Sbjct:   28 DGPEVIKLLKEFESDSRCKGKQFWPELIGVPALYAKGIIEKENPSITNIPILLNGSPVTKDFRCDRVRLFVNILGDVVQIPRV 110          
BLAST of CF835841 vs. ExPASy Swiss-Prot
Match: ICID_SOLTU (Wound-induced proteinase inhibitor 1 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.199e-12
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = -2
Query:  198 DGPNLV--MSAFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRI 425
            DGP ++     F+C  K  WPEL+G   ++A  IIEKEN  +  + +LL G+PVT DYR +RVR++ N  G V+++PR+
Sbjct:   28 DGPEVIELQKEFECNGKQRWPELIGVPTKLAKGIIEKENSLITNVQILLNGSPVTMDYRCNRVRLFDNILGDVVQIPRV 106          
BLAST of CF835841 vs. ExPASy Swiss-Prot
Match: ICI1_SOLTU (Proteinase inhibitor 1 OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = -2
Query:  195 DGPNLV--MSAFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRIG 425
            DGP ++  +  F C  K  WPEL+G   ++A  IIEKEN  +  + +LL G+PVT D R DRVR++ N  G V+ +P +G
Sbjct:   28 DGPEVIQLLKEFQCKGKLRWPELIGVPTKLAKGIIEKENSLISNVHILLNGSPVTLDIRCDRVRLFDNILGYVVDIPVVG 107          
The following BLAST results are available for this feature:
BLAST of CF835841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ITH5_CUCMA5.444e-2066.67Inhibitor of trypsin and hageman factor OS=Cucurbi... [more]
BGIA_MOMCH1.812e-1556.06Glu S.griseus protease inhibitor OS=Momordica char... [more]
ICI_LINUS2.367e-1561.54Proteinase inhibitor OS=Linum usitatissimum PE=1 S... [more]
HPI_HEVBR2.004e-1455.07Protease inhibitor HPI OS=Hevea brasiliensis GN=PI... [more]
ATSI_AMACA3.779e-1355.88Trypsin/subtilisin inhibitor OS=Amaranthus caudatu... [more]
ICI1_SOLPE6.446e-1346.99Wound-induced proteinase inhibitor 1 OS=Solanum pe... [more]
ICID_SOLTU3.199e-1244.30Wound-induced proteinase inhibitor 1 OS=Solanum tu... [more]
ICI1_SOLTU4.619e-1143.75Proteinase inhibitor 1 OS=Solanum tuberosum PE=3 S... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01P21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835841 ID=CF835841; Name=CF835841; organism=Citrus sinensis; type=EST; length=591bp
TTTTTTTTTTTTTTAGCGCACGTAATTAAGGATAATATTATACTTTTTGT
TAAGGAACACGATTCATGTATGCTTTGACGAGCAACATATTCAAGGAGCA
AATTAGTCCAAGCATGCATTATCTCATAGCCCACAACAACACTTATTTCA
TTTATTTATTTATTAGTTATGAGATAGTAGATGGAGGAAATTCAACCAAT
ACGAGGAACCCTAATCACCTTCCCTTTCTTGTTGACCCAAACACGAACCC
TGTCAATCCTATAGTCCTTAGTAACTGGAGTTCCCTCAAGTAATACGATT
GCATGAACACAAGGATTCTCTTTCTCTATAATAGCAGCAGCAACCTCCCC
GTTTTTACCAACCAGCTCTGGCCATGAGCTCTTGCGTGGACAATCAAATG
CAGACATGACTAGGTTTGGTCCATCTTCCACAACTCCTTTCAATGCAGAT
ACGATGACTTCAGAGCCAAGCTCCTTGCCATCGGTCAGGCAAGGCTCGTG
ACGAGCGGCCAAAGACGGTTTTGCGGCGAAGGCCAAGAGAAAGAAGAAAA
GGGCGAGTGCTGGTAATGAACTCTTCATTGCTAATAATTGT
back to top