CF835846

Overview
NameCF835846
Unique NameCF835846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835846 vs. ExPASy Swiss-Prot
Match: CP74_LINUS (Allene oxide synthase, chloroplastic OS=Linum usitatissimum GN=CYP74A PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.212e-54
Identity = 97/189 (51.32%), Postives = 132/189 (69.84%), Query Frame = 3
Query:   78 GDYGLPFFGPIKDRLDYFYFQGQDKFFQDRINKHKSTIFKTNMPPGPFIASNPNVIAVLDAVSFPVLFDTSKVEKRNVFVGTFFPSVSFTGGHRVCAYLDPSEPKHSSLKSFILSTLASKHDKFIPLFKTCVSELFIELEDQMAEKGEANYNTLNDTLAFNFFFRLFCDKSPNDTKIASKGPSFANKWL 644
            GDYGLP  GPI+DRLDYFY QG+++FF+ R+ K+KST+++ NMPPGPFIASNP VI +LDA SFPVLFD SKVEK+++F GT+ PS   TGG+R+ +YLDPSEP H+ LK  + + + ++ D  IP F +  ++L   +E  +A KG+A +N   +  AFNF  R F    P DT +    PS  +KW+
Sbjct:   77 GDYGLPGIGPIQDRLDYFYNQGREEFFKSRLQKYKSTVYRANMPPGPFIASNPRVIVLLDAKSFPVLFDMSKVEKKDLFTGTYMPSTELTGGYRILSYLDPSEPNHTKLKQLLFNLIKNRRDYVIPEFSSSFTDLCEVVEYDLATKGKAAFNDPAEQAAFNFLSRAFFGVKPIDTPLGKDAPSLISKWV 265          
BLAST of CF835846 vs. ExPASy Swiss-Prot
Match: CP74A_ARATH (Allene oxide synthase, chloroplastic OS=Arabidopsis thaliana GN=CYP74A PE=1 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.212e-54
Identity = 96/189 (50.79%), Postives = 129/189 (68.25%), Query Frame = 3
Query:   78 GDYGLPFFGPIKDRLDYFYFQGQDKFFQDRINKHKSTIFKTNMPPGPFIASNPNVIAVLDAVSFPVLFDTSKVEKRNVFVGTFFPSVSFTGGHRVCAYLDPSEPKHSSLKSFILSTLASKHDKFIPLFKTCVSELFIELEDQMAEKGEANYNTLNDTLAFNFFFRLFCDKSPNDTKIASKGPSFANKWL 644
            G+YGLP  GPIKDR DYFY QG ++FF+ RI K+ ST+++ NMPPG FIA NP V+A+LD  SFPVLFD  KVEK+++F GT+ PS   TGG+R+ +YLDPSEPKH  LK+ +   L S  ++  P F+   SELF  LE +++ KG+A++   +D  AFNF  R F   +P DTK+ +  P    KW+
Sbjct:   59 GNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKVEKKDLFTGTYMPSTELTGGYRILSYLDPSEPKHEKLKNLLFFLLKSSRNRIFPEFQATYSELFDSLEKELSLKGKADFGGSSDGTAFNFLARAFYGTNPADTKLKADAPGLITKWV 247          
BLAST of CF835846 vs. ExPASy Swiss-Prot
Match: C74A2_PARAR (Allene oxide synthase OS=Parthenium argentatum GN=CYP74A2 PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.221e-53
Identity = 92/190 (48.42%), Postives = 138/190 (72.63%), Query Frame = 3
Query:   78 GDYGLPFFGPIKDRLDYFYFQG-QDKFFQDRINKHKSTIFKTNMPPGPFIASNPNVIAVLDAVSFPVLFDTSKVEKRNVFVGTFFPSVSFTGGHRVCAYLDPSEPKHSSLKSFILSTLASKHDKFIPLFKTCVSELFIELEDQMAEKGEANYNTLNDTLAFNFFFRLFCDKSPNDTKIASKGPSFANKWL 644
            G YG+PFF PIKDRL+YFY  G +D++F+ R+ K++ST+F+ NMPPGPF++SNP VI +LDA SFP+LFD SKVEK+++F GT+ PS   TGG+RV +YLDPSEP+H+ LK+ +   L +  ++ IP F+T  +ELF  LE ++A+ G+A +N + +  AF F  R + + +P +TK+ +  P+  + W+
Sbjct:   13 GSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSKVEKKDLFTGTYMPSTKLTGGYRVLSYLDPSEPRHAQLKNLLFFMLKNSSNRVIPQFETTYTELFEGLEAELAKNGKAAFNDVGEQAAFRFLGRAYFNSNPEETKLGTSAPTLISSWV 202          
BLAST of CF835846 vs. ExPASy Swiss-Prot
Match: C74A2_ORYSJ (Allene oxide synthase 2 OS=Oryza sativa subsp. japonica GN=CYP74A2 PE=2 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 1.949e-51
Identity = 94/195 (48.21%), Postives = 134/195 (68.72%), Query Frame = 3
Query:   78 GDYGLPFFGPIKDRLDYFYFQGQDKFFQDRINKHKSTIFKTNMPPGPFIASNPNVIAVLDAVSFPVLFDTSKVEKRNVFVGTFFPSVSFTGGHRVCAYLDPSEPKHSSLKSFILSTLASKHDKFIPLFKTCVSELFIELEDQMAE-KGEANYNTLNDTLAFNFFFRLFCDKSPN-DTKIASKGPSFANKWLFPQL 656
            G YG+PF   ++DRLD++Y QGQDK+F+ R  ++ ST+ + N+PPGPF+A +P V+A+LDA SFPVLFD +KVEKR+VF GTF PS S TGG+RVCAYLDPSEP H+ +K  +LS L S+ D F+P+F++    L   +E Q+A   G++++  LND  +F F    +    P+  + + + GP+ A  WL  QL
Sbjct:   14 GSYGVPFVSAVRDRLDFYYLQGQDKYFESRAERYGSTVVRINVPPGPFMARDPRVVALLDAKSFPVLFDVAKVEKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHAKIKQLLLSLLVSRKDAFVPVFRSNFGALLDTVESQLASGGGKSDFTALNDATSFEFIGEAYFGVRPSASSSLGTGGPTKAALWLLWQL 208          
BLAST of CF835846 vs. ExPASy Swiss-Prot
Match: C74A1_ORYSJ (Allene oxide synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CYP74A1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.445e-46
Identity = 88/194 (45.36%), Postives = 123/194 (63.40%), Query Frame = 3
Query:   78 GDYGLPFFGPIKDRLDYFYFQG-QDKFFQDRINKHKSTIFKTNMPPGPFIASNPNVIAVLDAVSFPVLFDTSKVEKRNVFVGTFFPSVSFTGGHRVCAYLDPSEPKHSSLKSFILSTLASKHDKFIPLFKTCVSELFIELEDQMAEKGEANYNTLNDTLAFNFFFRLFCDKSPNDTKIASKGPSFANKWLFPQL 656
            GDYG P  G I+DR +YFY  G +D FF  R+  H+ST+ + NMPPGPF+A +P V+A+LDA SFPVLFDTS V+K ++F GTF PS   TGG+RV +YLDPSEP H+ LK+ +   L+ +  + IP F+    +LF  +E+ +A  G+A++   ND  AF F  +    + P  + +   GP    KW+  QL
Sbjct:   52 GDYGPPVVGAIRDRYEYFYGPGGRDGFFAARVRAHRSTVVRLNMPPGPFVARDPRVVALLDAASFPVLFDTSLVDKTDLFTGTFMPSTDLTGGYRVLSYLDPSEPNHAPLKTLLFYLLSHRRQQVIPKFREVYGDLFGLMENDLARVGKADFGVHNDAAAFGFLCQGLLGRDPAKSALGRDGPKLITKWVLFQL 245          
BLAST of CF835846 vs. ExPASy Swiss-Prot
Match: C74A4_ORYSJ (Allene oxide synthase 4 OS=Oryza sativa subsp. japonica GN=CYP74A4 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.109e-38
Identity = 76/194 (39.18%), Postives = 116/194 (59.79%), Query Frame = 3
Query:   78 GDYGLPFFGPIKDRLDYFYFQGQDKFFQDRINKHK-STIFKTNMPPGPFIASNPNVIAVLDAVSFPVLFDTSKVEKRNVFVGTFFPSVSFTGGHRVCAYLDPSEPKHSSLKSFILSTLASKHDKFIPLFKTCVSELFIELEDQMAEKGEANYNTLNDTLAFNFFFRLFCDKSPNDTKIASKGPSFANKWLFPQL 656
            G YG+PF  P++DRLDY+YFQG D+FF+ R+ +H  +T+ + NMPPGPF+A +P V+A+LDA SF VL D S V+K +   GTF PS++  GGHR  A+LD ++P+H+ +K  ++S  A++     P F+   + +F E++  +   G   +N LN     +F        +P    +     + A KWL  QL
Sbjct:   34 GGYGVPFLSPLRDRLDYYYFQGADEFFRSRVARHGGATVLRVNMPPGPFLAGDPRVVALLDARSFRVLLDDSMVDKADTLDGTFMPSLALFGGHRPLAFLDAADPRHAKIKRVVMSLAAARMHHVAPAFRAAFAAMFDEVDAGLVAGGPVEFNKLNMRYMLDFTCAALFGGAPPSKAMGDAAVTKAVKWLIFQL 227          
BLAST of CF835846 vs. ExPASy Swiss-Prot
Match: C74A3_ORYSJ (Allene oxide synthase 3 OS=Oryza sativa subsp. japonica GN=CYP74A3 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.499e-35
Identity = 75/194 (38.66%), Postives = 113/194 (58.25%), Query Frame = 3
Query:   78 GDYGLPFFGPIKDRLDYFYFQGQDKFFQDRINKHK-STIFKTNMPPGPFIASNPNVIAVLDAVSFPVLFDTSKVEKRNVFVGTFFPSVSFTGGHRVCAYLDPSEPKHSSLKSFILSTLASKHDKFIPLFKTCVSELFIELEDQMAEKGEANYNTLNDTLAFNFFFRLFCDKSPNDTKIASKGPSFANKWLFPQL 656
            G YG+PFF P++DRLDYFYFQG +++F+ R+ +H  +T+ + NMPPGPFI+ NP V+A+LDA SF VL D S V+K +   GT+ PS +  GGHR  A+LD ++P+H+ +K  ++S  A++     P F+   + +F  +E  +    E  +N LN     +F         P    +     + A  WL  QL
Sbjct:   34 GGYGVPFFSPLRDRLDYFYFQGAEEYFRSRVARHGGATVLRVNMPPGPFISGNPRVVALLDARSFRVLLDDSMVDKADTLDGTYMPSRALFGGHRPLAFLDAADPRHAKIKRVVMSLAAARMHHVAPAFRAAFAAMFDAVEAGLGAAVE--FNKLNMRYMLDFTCAALFGGEPPSKVVGDGAVTKAMAWLAFQL 225          
The following BLAST results are available for this feature:
BLAST of CF835846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CP74_LINUS3.212e-5451.32Allene oxide synthase, chloroplastic OS=Linum usit... [more]
CP74A_ARATH3.212e-5450.79Allene oxide synthase, chloroplastic OS=Arabidopsi... [more]
C74A2_PARAR1.221e-5348.42Allene oxide synthase OS=Parthenium argentatum GN=... [more]
C74A2_ORYSJ1.949e-5148.21Allene oxide synthase 2 OS=Oryza sativa subsp. jap... [more]
C74A1_ORYSJ1.445e-4645.36Allene oxide synthase 1, chloroplastic OS=Oryza sa... [more]
C74A4_ORYSJ1.109e-3839.18Allene oxide synthase 4 OS=Oryza sativa subsp. jap... [more]
C74A3_ORYSJ1.499e-3538.66Allene oxide synthase 3 OS=Oryza sativa subsp. jap... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01P24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835846 ID=CF835846; Name=CF835846; organism=Citrus sinensis; type=EST; length=656bp
AAAACTGAACCTGTTAAACAATGGCTTCCTCTTCTACTTCATCACCACCC
TCTTATCTTCCACTGAAACCAATCCCAGGTGACTATGGCTTGCCCTTCTT
TGGCCCCATTAAAGATCGTCTAGATTACTTCTACTTTCAAGGCCAAGACA
AGTTCTTCCAAGACCGAATCAACAAACACAAATCCACAATCTTCAAAACC
AACATGCCTCCTGGTCCTTTTATTGCCTCTAACCCTAACGTCATCGCTGT
CCTCGACGCCGTCTCCTTCCCCGTCCTCTTCGACACATCCAAAGTCGAAA
AACGCAACGTTTTTGTTGGCACTTTCTTCCCTTCAGTGTCCTTCACCGGA
GGCCACCGTGTTTGTGCCTATCTTGATCCTTCTGAGCCCAAACATTCGTC
TTTGAAATCTTTCATCTTATCTACACTCGCGAGCAAGCACGACAAGTTCA
TACCCCTCTTTAAAACTTGTGTATCCGAGCTCTTTATCGAGCTTGAAGAT
CAAATGGCTGAAAAAGGAGAAGCAAATTACAACACCCTTAATGATACATT
AGCTTTCAACTTCTTTTTTCGCTTATTTTGCGATAAAAGCCCTAATGATA
CAAAAATAGCATCAAAAGGTCCAAGTTTTGCTAATAAATGGTTGTTTCCC
CAACTT
back to top