CF835855

Overview
NameCF835855
Unique NameCF835855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835855 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 8.239e-77
Identity = 132/158 (83.54%), Postives = 146/158 (92.41%), Query Frame = -3
Query:  307 LGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAAL 780
            LGL LCL WN+V+VT AWIKGEGVKIWFLAIIYFIAGVPGAY LWYRPLYRAFRT+SA+KFGWFF+FYLLHIGFCI A+VAPPI+FKGKSLTG+L A+DV+GD+ LVGIFYFIGFG FCLE+L+SIWVIQQVYM+FRG GK AEMKREAA GAM AAL
Sbjct:  131 LGLVLCLTWNVVSVTAAWIKGEGVKIWFLAIIYFIAGVPGAYALWYRPLYRAFRTDSAIKFGWFFMFYLLHIGFCILAAVAPPIVFKGKSLTGILSAIDVVGDYTLVGIFYFIGFGFFCLETLISIWVIQQVYMHFRGGGKTAEMKREAALGAMGAAL 288          
BLAST of CF835855 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 9.109e-76
Identity = 127/160 (79.38%), Postives = 145/160 (90.62%), Query Frame = -3
Query:  307 TYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAAL 786
            TYLGL LCL WNI+AVTTAWIKGEGV IW LA+IYFIAGVPG YVLWYRPLYRAFRT+SA+ FGWFFLFY+LHI FC+FA+VAPP++FKGKSL G+LPA+DV+   A+VGIFYFIGF  FCLES+VSIWVIQQVYMYFRGSGK  +M+REAARGA+RAA+
Sbjct:  130 TYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYRPLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIVGIFYFIGFAFFCLESVVSIWVIQQVYMYFRGSGKQDQMRREAARGALRAAV 289          
BLAST of CF835855 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 2.650e-75
Identity = 129/160 (80.62%), Postives = 146/160 (91.25%), Query Frame = -3
Query:  307 TYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAAL 786
            TYLGL L L WNI+AVTTAWIKGEGV IW LA+IYFI+GVPG YVLWYRPLYRAFR++SA  FGWFFLFY+LHI FC+FA+VAPPI+FKGKSL G+LPA+DV+   ALVGIFYFIGFGLFCLES+VSIWVIQQVYMYFRGSGKA +M+R+AARGAMRAA+
Sbjct:  132 TYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVIYFISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIVFKGKSLAGILPAIDVLSAQALVGIFYFIGFGLFCLESVVSIWVIQQVYMYFRGSGKADDMRRDAARGAMRAAI 291          
BLAST of CF835855 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.007e-74
Identity = 131/158 (82.91%), Postives = 143/158 (90.51%), Query Frame = -3
Query:  307 LGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAAL 780
            LGL +CLLWNIVAVTTAWIKGEG  IWFLAIIYFI+GVPGAYV+WYRPLYRA RT+SA+KFGWFF  YL HI FC+FA+VAPPIIFKGKSLTG+LPA+DV+  + LVGIFYFIGFG FCLESLVSIWVIQQVYMYFRGSGKAAEMK+EA R AM AAL
Sbjct:  125 LGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYRAMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKSLTGILPAIDVLSGNILVGIFYFIGFGFFCLESLVSIWVIQQVYMYFRGSGKAAEMKQEATRRAMMAAL 282          
BLAST of CF835855 vs. ExPASy Swiss-Prot
Match: SCAM3_ORYSJ (Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.110e-72
Identity = 125/159 (78.62%), Postives = 143/159 (89.94%), Query Frame = -3
Query:  310 TYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAA 786
            ++LGL  CL WNI+A TTAW+KGEGV IW LAIIYFI+GVPGAYVLWYRPLY A RTESA+KFGWFFLFYL+HI FC++A+VAPP  FKGKSL G+LPA+DV+G  A+VGIFYF+GFGLFCLESL+SI VIQQVYMYFRGSGKAAEMKREAARGA+ +A
Sbjct:  123 SFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSLAGILPAIDVIGRSAIVGIFYFVGFGLFCLESLLSIGVIQQVYMYFRGSGKAAEMKREAARGALSSA 281          
BLAST of CF835855 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSJ (Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.110e-72
Identity = 121/159 (76.10%), Postives = 145/159 (91.19%), Query Frame = -3
Query:  310 TYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAA 786
            ++LGL  CL WN++AVT+AW+KGEGVKIW LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG FFL YL HI FC+F++VAPP++F+GKSL G+LPA+D++  +ALVGIFYF+GFGLFC+ESL+SIWVIQQVYMYFRGSGKAAEMKR+A RGAMRAA
Sbjct:  147 SFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFEGKSLAGILPAIDLISKNALVGIFYFVGFGLFCVESLLSIWVIQQVYMYFRGSGKAAEMKRDATRGAMRAA 305          
BLAST of CF835855 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSI (Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.110e-72
Identity = 121/159 (76.10%), Postives = 145/159 (91.19%), Query Frame = -3
Query:  310 TYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAA 786
            ++LGL  CL WN++AVT+AW+KGEGVKIW LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG FFL YL HI FC+F++VAPP++F+GKSL G+LPA+D++  +ALVGIFYF+GFGLFC+ESL+SIWVIQQVYMYFRGSGKAAEMKR+A RGAMRAA
Sbjct:  147 SFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFEGKSLAGILPAIDLISKNALVGIFYFVGFGLFCVESLLSIWVIQQVYMYFRGSGKAAEMKRDATRGAMRAA 305          
BLAST of CF835855 vs. ExPASy Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 7.980e-72
Identity = 126/157 (80.25%), Postives = 142/157 (90.45%), Query Frame = -3
Query:  310 LGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAA 780
            LGL  CL WNI+A T AWIKG GV IW LAIIYFI+GVPGAYVLWYRPLY A RTESA+KFGWFFLFYL+HI FCI+++VAPP  FKGKSL G+LPA+DV+G++A+VGIFYFIGFGLFCLESL+S+ VIQQVYMYFRGSGKAAEMKREAARGAMR+A
Sbjct:  129 LGLAACLFWNIIATTAAWIKGAGVMIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHILFCIWSAVAPPFPFKGKSLAGILPAIDVIGNNAIVGIFYFIGFGLFCLESLLSVVVIQQVYMYFRGSGKAAEMKREAARGAMRSA 285          
BLAST of CF835855 vs. ExPASy Swiss-Prot
Match: SCAM4_ORYSJ (Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.099e-68
Identity = 114/157 (72.61%), Postives = 136/157 (86.62%), Query Frame = -3
Query:  310 LGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAA 780
            LGL LCL WNI+ VT AWIKGEG KIWFLA+IYFI G PGAY LWYRPLYRA R ESA+KFGWFFLFYL+HI FC++A+V+P I+F GKSLTG+ PA+ ++G+  +VG+FYF+GF +FCLESL+S+WVIQ+VY+YFRGSGK AEMKREAAR A RAA
Sbjct:  156 LGLVLCLFWNIICVTAAWIKGEGPKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPSILFVGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGSGKEAEMKREAARSAARAA 312          
BLAST of CF835855 vs. ExPASy Swiss-Prot
Match: SCAM2_ARATH (Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.612e-64
Identity = 115/160 (71.88%), Postives = 134/160 (83.75%), Query Frame = -3
Query:  307 TYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAAL 786
            T LGL  CLLWNIVAVT AWIKGEG  IW L+IIYF+AGVPGAYVLWYRPLYRA RT+SA+KFG FF FY+ HI FC FA+VAPP+IF+GKSLTG LPA++++  +A VGI YFIG G FC+E+L++IWVIQQVY YFRGSGKAAEMKREA +  +  AL
Sbjct:  124 TLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRATRTDSALKFGAFFFFYVFHIAFCGFAAVAPPVIFQGKSLTGFLPAIELLTTNAAVGIMYFIGAGFFCIETLLNIWVIQQVYAYFRGSGKAAEMKREATKSTLMRAL 283          
The following BLAST results are available for this feature:
BLAST of CF835855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SCAM_PEA8.239e-7783.54Secretory carrier-associated membrane protein OS=P... [more]
SCAM3_ARATH9.109e-7679.38Secretory carrier-associated membrane protein 3 OS... [more]
SCAM5_ARATH2.650e-7580.63Secretory carrier-associated membrane protein 5 OS... [more]
SCAM1_ARATH1.007e-7482.91Secretory carrier-associated membrane protein 1 OS... [more]
SCAM3_ORYSJ6.110e-7278.62Secretory carrier-associated membrane protein 3 OS... [more]
SCAM1_ORYSJ6.110e-7276.10Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSI6.110e-7276.10Putative secretory carrier-associated membrane pro... [more]
SCAM2_ORYSJ7.980e-7280.25Secretory carrier-associated membrane protein 2 OS... [more]
SCAM4_ORYSJ4.099e-6872.61Secretory carrier-associated membrane protein 4 OS... [more]
SCAM2_ARATH1.612e-6471.88Secretory carrier-associated membrane protein 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835855 ID=CF835855; Name=CF835855; organism=Citrus sinensis; type=EST; length=788bp
TTTTTTTTTTTTTTTTTGACGAAGAAATAATCATGGAAATACATTTAACA
CACGAACGAATTCATCATACATGGGAAATGGGTTGCATTAGAATCTCAAC
AAGGGCGAAGCCTATACCTCTCTAGTAACCAACATATACAAAACAGAGCA
CTCGAAATAAGTCAAAAAGAAAAAGAACTGATGTTAAGCCAGGCCAGTCT
CCGAACATATCATCTCCGAGAGCATTTTCCATGGCTTTAAGTACATGTAC
AACCTAAATCATACAGAAGGTTATCACAGTGTTCTATCCTCTACTGAAGT
ATATTATAAAGCTGCCCTCATAGCCCCTCGTGCAGCCTCACGCTTCATCT
CTGCAGCTTTACCACTTCCTCGGAAATACATGTACACTTGCTGAATAACC
CAGATGCTGACCAATGATTCCAGGCAGAATAATCCAAATCCAATGAAGTA
GAATATCCCAACCAGTGCATGGTCACCCATAACATCCACCGCAGGCAAAA
CGCCAGTGAGTGACTTTCCTTTGAAAATTATTGGAGGAGCAACTGAGGCA
AATATGCAAAAGCCAATGTGGAGCAAGTAAAACAAGAAAAACCATCCAAA
CTTCATTGCACTTTCAGTCCTGAAAGCACGATAGAGTGGACGATACCACA
GCACATAAGCTCCTGGAACTCCTGCTATGAAGTAAATAATGGCGAGAAAC
CAGATTTTTACACCTTCGCCTTTGATCCATGCTGTGGTAACAGCTACGAT
GTTCCACAGGAGACACAAAAACAATCCTAAATATGTTG
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