CF835856

Overview
NameCF835856
Unique NameCF835856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13560 contig Csv1_Contig13560:114..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.390e-80
Identity = 144/230 (62.61%), Postives = 164/230 (71.30%), Query Frame = 3
Query:    6 MARRYDSNPF-DEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCIF 692
            MA RYD NPF +EEEVNPF+                      N+  VPPA+NSRLSPLP EP GF++ R   I +                      +RREQD++RKE+AAARAGIV+E KNWPPFFP+IHHDIANEIP+HLQRLQYV FATYLGL LCL WNI+AVTTAWIKGEGV IW LA+IYFIAGVPG YVLWYRPLYRAF T+SA+ FGWFFLFY+LHI FC+F
Sbjct:    1 MANRYDPNPFAEEEEVNPFA----------------------NARGVPPASNSRLSPLPPEPVGFDYGRTVDIPLDRAGTQDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPVHLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYRPLYRAFRTDSALSFGWFFLFYMLHIAFCVF 208          
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.924e-76
Identity = 142/228 (62.28%), Postives = 159/228 (69.74%), Query Frame = 3
Query:    6 MARRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCI 689
            MA RYD NPFDEE+VNPFS+P                       S   ATNSR +PL  + A +N+     +DIP                     R+REQ+VRRKEEA ARAGIV+EEKNWPPFFPIIHHDI NEIPIHL+ LQYVAF + LGL LCL WN+V+VT AWIKGEGVKIWFLAIIYFIAGVPGAY LWYRPLYRAF T+SA+KFGWFF+FYLLHIGFCI
Sbjct:    1 MAGRYDPNPFDEEQVNPFSNPR----------------------SAASATNSRPAPLNPDRADYNYGFGPTVDIPLDTSTDGKKKERDLQAKEAELRKREQEVRRKEEAIARAGIVIEEKNWPPFFPIIHHDITNEIPIHLRTLQYVAFFSLLGLVLCLTWNVVSVTAAWIKGEGVKIWFLAIIYFIAGVPGAYALWYRPLYRAFRTDSAIKFGWFFMFYLLHIGFCI 206          
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.629e-75
Identity = 137/229 (59.83%), Postives = 160/229 (69.87%), Query Frame = 3
Query:    6 MARRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCIF 692
            MA RYD NPFDE++VNPF+                         SVPPA+NSR+ PLPHEP GF  +R A +DIP                      +RE ++RR+EEAA+RAGIV+EEKNWPPFFPIIHHDI+NEIPIHLQR+QY+AF++ LGL  CL WNI+A T AWIKG GV IW LAIIYFI+GVPGAYVLWYRPLY A  TESA+KFGWFFLFYL+HI FCI+
Sbjct:    1 MAGRYDRNPFDEDDVNPFA-----------------------GGSVPPASNSRMPPLPHEP-GFYNDRGATVDIPLDSTKDMKKKEKELQAKEAELNKRESELRRREEAASRAGIVIEEKNWPPFFPIIHHDISNEIPIHLQRMQYLAFSSLLGLAACLFWNIIATTAAWIKGAGVMIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHILFCIW 205          
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 1.801e-74
Identity = 140/232 (60.34%), Postives = 161/232 (69.40%), Query Frame = 3
Query:    6 MARRYDSNPFDEE-EVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFER--DAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCIF 692
            M  RYD N FDE+ EVNPF++P                       SVP A+NSRLSPLP EPAGF + R  D P+D P                     RRREQD++RK++AAARAGIV+E KNWP FFP+IHHDIANEI + LQRLQY+AFATYLGL L L WNI+AVTTAWIKGEGV IW LA+IYFI+GVPG YVLWYRPLYRAF ++SA  FGWFFLFY+LHI FC+F
Sbjct:    1 MGGRYDRNTFDEQDEVNPFANPG----------------------SVPAASNSRLSPLPPEPAGFGYGRTVDIPLDRPGSGAQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVIEAKNWPTFFPLIHHDIANEILVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVIYFISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYMLHILFCLF 210          
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM4_ORYSJ (Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 7.566e-73
Identity = 137/230 (59.57%), Postives = 159/230 (69.13%), Query Frame = 3
Query:   15 RYDSNPFDE---EEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSA-SVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCIF 692
            RYD NPF+E   +EVNPF+D A +               TT S  S PPAT+  LSPLP EPA F  +   P+DIP                      RRE++++R+EEAAARAGIVLE+KNWPPFFPIIH+DI NEIP+HLQR QYVAFA+ LGL LCL WNI+ VT AWIKGEG KIWFLA+IYFI G PGAY LWYRPLYRA   ESA+KFGWFFLFYL+HI FC++
Sbjct:    6 RYD-NPFEEGGGDEVNPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATH--LSPLPPEPADFYNDFSTPVDIPMDTSKDMKTREKELLAKEAELNRREKEIKRREEAAARAGIVLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEGPKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVY 232          
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSJ (Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.291e-72
Identity = 135/230 (58.70%), Postives = 162/230 (70.43%), Query Frame = 3
Query:    6 MARRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPP-ATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCIF 692
            MA RYDSNPF+E++VNPFS+ A R                 N  +VP  ++NSRLSPLP EPA F     A +DIP                      +RE++++R+EEAAARAGIV+EEKNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVT+AW+KGEGVKIW LAIIYFI+GVPGAYVLWYRPLY A  T+SA+KFG FFL YL HI FC+F
Sbjct:    1 MAGRYDSNPFEEDDVNPFSEQA-RGKAGGQPSYGGGAFYMPNPRNVPSVSSNSRLSPLPPEPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVF 225          
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSI (Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.291e-72
Identity = 135/230 (58.70%), Postives = 162/230 (70.43%), Query Frame = 3
Query:    6 MARRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPP-ATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCIF 692
            MA RYDSNPF+E++VNPFS+ A R                 N  +VP  ++NSRLSPLP EPA F     A +DIP                      +RE++++R+EEAAARAGIV+EEKNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVT+AW+KGEGVKIW LAIIYFI+GVPGAYVLWYRPLY A  T+SA+KFG FFL YL HI FC+F
Sbjct:    1 MAGRYDSNPFEEDDVNPFSEQA-RGKAGGQPSYGGGAFYMPNPRNVPSMSSNSRLSPLPPEPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVF 225          
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.179e-71
Identity = 132/226 (58.41%), Postives = 158/226 (69.91%), Query Frame = 3
Query:   15 RYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCIF 692
            RY S+ FD+ E+NPF++P                       SVP AT S+LSPLP EP    ++R A +DIP                     +RREQ+++RKE+A A+AGIV+EEKNWPPFFP+IHHDI+NEIPIHLQR+QYVAF + LGL +CLLWNIVAVTTAWIKGEG  IWFLAIIYFI+GVPGAYV+WYRPLYRA  T+SA+KFGWFF  YL HI FC+F
Sbjct:    3 RYQSHSFDDGEINPFANPT----------------------SVPAAT-SKLSPLPPEP----YDRGATMDIPLDSGKDLKAKEKELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQRIQYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYRAMRTDSALKFGWFFFTYLFHIAFCVF 201          
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM3_ORYSJ (Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.886e-69
Identity = 126/229 (55.02%), Postives = 157/229 (68.56%), Query Frame = 3
Query:    6 MARRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCIF 692
            MA ++  N F++++VNPF+                         SVPPA NSRL PL HEPA F       +DIP                      +RE++++RKEEAAA+AGIV+E+KNWPPFFP+IHH+I+NEIPIHLQR+QY+AF+++LGL  CL WNI+A TTAW+KGEGV IW LAIIYFI+GVPGAYVLWYRPLY A  TESA+KFGWFFLFYL+HI FC++
Sbjct:    1 MAGKHGRNGFEDDDVNPFA-----------------------GGSVPPANNSRLPPLSHEPADFY-----NVDIPLDSSKDLKKKEKELQAMEAELNKRERELKRKEEAAAQAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLAFSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHIIFCVW 201          
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM2_ARATH (Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.250e-67
Identity = 126/226 (55.75%), Postives = 151/226 (66.81%), Query Frame = 3
Query:   15 RYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCIF 692
            R+D NPF +EE+NPF+                      N  SVPPA+NS L PLP EP    ++R A +DIP                     +R+EQ+++R+E+A AR G+V+EEKNWP FFP+IHHDI NEIPIHLQ++QYVAF T LGL  CLLWNIVAVT AWIKGEG  IW L+IIYF+AGVPGAYVLWYRPLYRA  T+SA+KFG FF FY+ HI FC F
Sbjct:    3 RHDPNPFADEEINPFA----------------------NHTSVPPASNSYLKPLPPEP----YDRGATVDIPLDSGNDLRAKEMELQAKENELKRKEQELKRREDAIARTGVVIEEKNWPEFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRATRTDSALKFGAFFFFYVFHIAFCGF 202          
The following BLAST results are available for this feature:
BLAST of CF835856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SCAM3_ARATH6.390e-8062.61Secretory carrier-associated membrane protein 3 OS... [more]
SCAM_PEA1.924e-7662.28Secretory carrier-associated membrane protein OS=P... [more]
SCAM2_ORYSJ3.629e-7559.83Secretory carrier-associated membrane protein 2 OS... [more]
SCAM5_ARATH1.801e-7460.34Secretory carrier-associated membrane protein 5 OS... [more]
SCAM4_ORYSJ7.566e-7359.57Secretory carrier-associated membrane protein 4 OS... [more]
SCAM1_ORYSJ1.291e-7258.70Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSI1.291e-7258.70Putative secretory carrier-associated membrane pro... [more]
SCAM1_ARATH3.179e-7158.41Secretory carrier-associated membrane protein 1 OS... [more]
SCAM3_ORYSJ3.886e-6955.02Secretory carrier-associated membrane protein 3 OS... [more]
SCAM2_ARATH1.250e-6755.75Secretory carrier-associated membrane protein 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835856 ID=CF835856; Name=CF835856; organism=Citrus sinensis; type=EST; length=692bp
TTGTGATGGCCCGTCGTTACGACAGCAATCCCTTCGATGAAGAGGAAGTG
AATCCTTTCTCCGACCCAGCTGTTAGGGGGAAAAGCTCGGGCCAATCGAG
GTTTGGTGGAGGTGGATTTTTTACAACAAACAGTGCAAGTGTTCCACCTG
CAACTAATTCAAGGCTTTCACCTCTTCCTCATGAACCAGCTGGTTTCAAT
TTTGAACGTGATGCGCCTATTGACATTCCTCTTGATACAGCTGCGGATTT
GAAGAAGAAAGAGAAGGAACTTCAAGCTAAGGAGGCTGAATTAAGAAGGC
GGGAGCAGGATGTAAGAAGGAAAGAAGAAGCTGCAGCACGAGCTGGAATT
GTTCTTGAGGAGAAAAACTGGCCACCATTTTTCCCCATTATTCATCATGA
CATTGCAAACGAAATACCAATTCATCTACAAAGGCTGCAATATGTTGCAT
TTGCAACATATTTAGGATTGTTTTTGTGTCTCCTGTGGAACATCGTAGCT
GTTACCACAGCATGGATCAAAGGCGAAGGTGTAAAAATCTGGTTTCTCGC
CATTATTTACTTCATAGCAGGAGTTCCAGGAGCTTATGTGCTGTGGTATC
GTCCACTCTATCGTGCTTTCANGACTGAAAGTGCAATGAAGTTTGGATGG
TTTTTCTTGTTTTACTTGCTCCACATTGGCTTTTGCATATTT
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