CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1138 contig Csv1_Contig1138:1..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: TRNH_DATST (Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.409e-69
Identity = 125/187 (66.84%), Postives = 155/187 (82.89%), Query Frame = -3
Query:  234 RQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVNGF 794
            RQ LME+V S F+GKLNIL+NNAGTTIPKEAT FT ED+S IM TNFE++Y+L QLA+PLLKASGN +I+F SS  GVIAVPL SIYA++KGA+NQ+TK+LACEW KD+IRVNAVAPWII T +I++  + P   ++   LI R P+ R GEP+EVSS+V +LCLP ASY+TGQ+ C+DGGY+VNGF
Sbjct:   81 RQTLMESVTSSFNGKLNILINNAGTTIPKEATNFTAEDYSIIMGTNFEASYNLCQLAHPLLKASGNASIVFNSSAAGVIAVPLSSIYAASKGAINQVTKSLACEWAKDSIRVNAVAPWIINTPIIEAACQVPSQKKNIESLIGRAPMKRAGEPSEVSSLVTYLCLPTASYITGQIICVDGGYTVNGF 267          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.810e-62
Identity = 113/187 (60.43%), Postives = 148/187 (79.14%), Query Frame = -3
Query:  237 RQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLID-SIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVNG 794
            R KLM+TV   FDGKLNILVNNAG  I KEA +FT +D++ IM TNFE+AYHLSQ+AYPLLKAS NGN+IF+SS+ G  A+P  S+Y+++KGA+NQ+TK+LACEW KDNIRVN+VAP +I T L++ +I+K+P   E     I +TP+ R G+P EVS+++AFLC PAASY+TGQ+   DGG++ NG
Sbjct:   85 RDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGFTANG 271          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.682e-58
Identity = 109/185 (58.92%), Postives = 141/185 (76.22%), Query Frame = -3
Query:  240 RQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVN 794
            RQ+LM TV + F GKLNILVNNAG  I KEA ++T+ED+S IM+ NFE+AYHLS LA+P LKAS  GN++FISSV+G +AVP  ++Y +TKGAM+QLT+ LA EW KDNIRVN V P +I TSL++   +DP   E+ ++LI R  + R GEP E++++VAFLC PAASYVTGQ+  +DGG   N
Sbjct:   73 RQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGLMAN 257          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.481e-57
Identity = 107/186 (57.53%), Postives = 141/186 (75.81%), Query Frame = -3
Query:  237 RQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVNG 794
            R++ M+TV + F GKLNILVNNAG  I KEA ++TMED+S IM+ NFE+AYHLS LA+P LKAS  GN++FISS++G  A+P  ++Y +TKGAM+QLT+ LA EW KDNIRVN V P +I TS+++   +DP   E+  +LI R  + R GEP E+++VVAFLC PAASYVTGQ+  +DGG+  NG
Sbjct:   73 REEFMKTVSNHFHGKLNILVNNAGIVIYKEAKDYTMEDYSHIMSINFEAAYHLSVLAHPFLKASERGNVVFISSISGASALPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSMVEMTIQDPEQKENLDKLIDRCALRRMGEPKELAAVVAFLCFPAASYVTGQIIYVDGGFMANG 258          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.934e-57
Identity = 111/187 (59.36%), Postives = 140/187 (74.87%), Query Frame = -3
Query:  234 RQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVNGF 794
            R+KLM+TV S F GKL+IL+NN G    K   ++T EDFS  ++TN ESAYHLSQLA+PLLKASG GNIIF+SS+ GV++  + SIY++TKGA+NQL +NLACEW  D IR NAVAP +I T L +++  D    E    +I R P+ R GEP EVSS+VAFLC+PAASY+TGQ  C+DGG +VNGF
Sbjct:   78 REKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDD----EFKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGLTVNGF 260          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: HDHA_ECOLI (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli (strain K12) GN=hdhA PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.158e-24
Identity = 65/168 (38.69%), Postives = 97/168 (57.74%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            GK++ILVNNAG   PK   +  M DF      N  S +HLSQL  P ++ +G G I+ I+S+         + YAS+K A + L +N+A + G+ NIRVN +AP  I T  + S+       E   +++  TPI R G+P ++++   FLC PAAS+V+GQ+  + GG
Sbjct:   87 GKVDILVNNAGGGGPKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITP----EIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: HDHA_ECO57 (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli O157:H7 GN=hdhA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.158e-24
Identity = 65/168 (38.69%), Postives = 97/168 (57.74%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            GK++ILVNNAG   PK   +  M DF      N  S +HLSQL  P ++ +G G I+ I+S+         + YAS+K A + L +N+A + G+ NIRVN +AP  I T  + S+       E   +++  TPI R G+P ++++   FLC PAAS+V+GQ+  + GG
Sbjct:   87 GKVDILVNNAGGGGPKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITP----EIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_THEMA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Thermotoga maritima GN=fabG PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24
Identity = 63/180 (35.00%), Postives = 102/180 (56.67%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            ++++E V  ++ G++++LVNNAG T          ED+  ++  N +  ++++Q+  P +    NG+I+ +SSV G+   P  + YA++K  +  +TK  A E    NIRVNAVAP  I T + + + +  R        + R P+ R G+P EV+ V+ FL    +SYVTGQV  IDGG
Sbjct:   70 KEVVEKVVQKY-GRIDVLVNNAGITRDALLVRMKEEDWDAVINVNLKGVFNVTQMVVPYMIKQRNGSIVNVSSVVGIYGNPGQTNYAASKAGVIGMTKTWAKELAGRNIRVNAVAPGFIETPMTEKLPEKAR-----ETALSRIPLGRFGKPEEVAQVILFLASDESSYVTGQVIGIDGG 243          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.316e-23
Identity = 63/185 (34.05%), Postives = 103/185 (55.68%), Query Frame = -3
Query:  246 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDS--IEKDPRVMEHASRLIPR-TPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYS 791
            Q  + +   +F G L++L+NNAG  I     E  + +++ ++  N    + +S+ A   +  SG GNII   SV GV+A P    Y ++KG + QLT+++A ++ K NIRVN V P II T L +   +E +   +E   +   +  P+ R G+P E+++V+ FL    +SY+TG     DGGY+
Sbjct:   68 QNAIRSAVDKFGG-LDVLINNAGIEIVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPEEIANVMLFLASDLSSYMTGSAITADGGYT 251          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.944e-23
Identity = 64/185 (34.59%), Postives = 103/185 (55.68%), Query Frame = -3
Query:  246 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDS--IEKDPRVMEHASRLIPR-TPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYS 791
            Q  +E+    F G L++L+NNAG  I     E  + D++ ++  N    + +S+ A   + A+G GNII   SV G++A P    Y ++KG + QLTK++A ++ K  IRVN V P II T L +   +E +   +E   +   +  P+ R G+P E+++V+ FL    +SY+TG     DGGY+
Sbjct:   68 QHAVESAVHTFGG-LDVLINNAGIEIVAPIHEMELSDWNKVLQVNLTGMFLMSKHALKHMLAAGKGNIINTCSVGGLVAWPDIPAYNASKGGVLQLTKSMAVDYAKHQIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPEEIANVMLFLASDLSSYMTGSAITADGGYT 251          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
TRNH_DATST6.409e-6966.84Tropinone reductase homolog OS=Datura stramonium P... [more]
TRN1_DATST5.810e-6260.43Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
TRN2_DATST8.682e-5858.92Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
TRN2_HYONI1.481e-5757.53Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
TRNH1_ARATH1.934e-5759.36Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
HDHA_ECOLI2.158e-2438.697-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
HDHA_ECO572.158e-2438.697-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
FABG_THEMA3.682e-2435.003-oxoacyl-[acyl-carrier-protein] reductase OS=Ther... [more]
BACC2_BACSU5.316e-2334.05Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
BACC_BACSU6.944e-2334.59Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
back to top