CF835872

Overview
NameCF835872
Unique NameCF835872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1944 contig Csv1_Contig1944:68..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835872 vs. ExPASy Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 3.793e-70
Identity = 145/226 (64.16%), Postives = 175/226 (77.43%), Query Frame = -1
Query:  119 GLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA--RPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXGTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 790
            GLRG+S  QAVLEGS Q++G NRLN    SRV+V   R G  +RAQQ  + PE+SRR+++GLVAAG+A GSFV+AV A+A PIKV           GT NSD+ RD  L LK+RF+IQPLSP          AK+I+NVK  IDKKAWPYVQNDLRLRASYLRYDLNT+ISAKPK+EKQSLK+LT KLFQTI NLD+AA+ KS+P+AEKYY+ETVS+LN+VL+K+G
Sbjct:   10 GLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSVPESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKLG 230          
BLAST of CF835872 vs. ExPASy Swiss-Prot
Match: PSBQ_SPIOL (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.211e-69
Identity = 143/225 (63.56%), Postives = 169/225 (75.11%), Query Frame = -1
Query:  119 GLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXGTLNSDEPRDLDLPL-KERFFIQPLSPXXXXXXXXXXAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 790
            GLRG+S  QAVLEGS Q+SG NRL+ P+ SRVAV + G  +RAQQ S E ETSRRAMLG VAAG+ASGSFV+AVLA+A PI V           GT NSD+ RD  LP  K+RF++QPL P          A +ILNVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISAKPKDEK+SL+ LT KLF +I NLDHAAKIKS  EAEKYY +TVS +N+VL+K+G
Sbjct:   10 GLRGAS--QAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAETSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG 232          
BLAST of CF835872 vs. ExPASy Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 2.229e-62
Identity = 140/226 (61.95%), Postives = 166/226 (73.45%), Query Frame = -1
Query:  119 GLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA-RPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXG-TLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 790
            GL G+S   AVLEGS +++G +RLN   + RVAVA R    VRAQQ+    ETSRR+++GLVAAG+A GSFVQAVLADA  IKV             T NSD+ RD  L LK+RF++QPL P          AKDI+NVK LID+KAWPYVQNDLR +ASYLRYDLNTIIS+KPKDEK+SLK+LT KLF TI NLD+AAK KS  +AEKYYAETVS LN+VL+K+G
Sbjct:    6 GLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKLG 224          
BLAST of CF835872 vs. ExPASy Swiss-Prot
Match: PSBQ_ONOVI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.550e-58
Identity = 134/228 (58.77%), Postives = 161/228 (70.61%), Query Frame = -1
Query:  119 SQAVLEGSFQL-SGPNRLNAPSNSRVAVARPGFTVRAQQ---------ASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXGTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLK-NLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 769
            +  +LEGS QL SG NR  + S+SR       F VRAQQ         ++ +P+++RRAMLGLVA G+AS SFVQAVLA+A PIKV           GTLNSDE RDL LPLKERF+IQPLSP          AK+I+ VK+ ID+K      NDLRLRASYLRYDLNT+IS+KPK++KQSLK +  GKLFQ I NLD+AAK+KS P+AEKYYA+ VSTLNDVLSK+G
Sbjct:    6 ASGLLEGSLQLMSGSNR--SSSSSRTRGPAGVFIVRAQQQEQQQGMSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNSDEARDLKLPLKERFYIQPLSPTEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRYDLNTVISSKPKEQKQSLKESSAGKLFQDIDNLDYAAKLKSAPQAEKYYADAVSTLNDVLSKIG 231          
BLAST of CF835872 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.489e-54
Identity = 117/207 (56.52%), Postives = 145/207 (70.05%), Query Frame = -1
Query:  119 SGPNRLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXGTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 736
            +GP R  A   SR+AV      VRA  A+ + +T RRA+LGLVA G+A G+  QA LA+A  PIK+           GTLNSD+ RD DLPL+ERF++QPL P          A+DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I++KPKDEK+ LK+LTGKLF TI  LDHAAKIKS  EAEKYY  T S L DVL+K+G
Sbjct:   19 AGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217          
BLAST of CF835872 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 8.489e-54
Identity = 117/207 (56.52%), Postives = 145/207 (70.05%), Query Frame = -1
Query:  119 SGPNRLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXGTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 736
            +GP R  A   SR+AV      VRA  A+ + +T RRA+LGLVA G+A G+  QA LA+A  PIK+           GTLNSD+ RD DLPL+ERF++QPL P          A+DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I++KPKDEK+ LK+LTGKLF TI  LDHAAKIKS  EAEKYY  T S L DVL+K+G
Sbjct:   19 AGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217          
BLAST of CF835872 vs. ExPASy Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.186e-53
Identity = 119/221 (53.85%), Postives = 147/221 (66.52%), Query Frame = -1
Query:  119 SHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNE-PETSRRAMLGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXGTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 775
            + + A + G  Q   P+R  A S +R AV      VRA    +   +  RRA++GLVA G+  G+  QA  A+    IK+           GTLNSD+ RD DLPLKERF++QPL P          A+DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++KPK+EK+SLK LTGKLF TI +LDHAAKIKSTPEAEKY+A T   L DVL+K+G
Sbjct:    2 AQAMASMTGLSQGVLPSR-RADSRTRTAVV----IVRASAEGDAVAQAGRRAVIGLVATGIVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQARDFDLPLKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKLG 217          
BLAST of CF835872 vs. ExPASy Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.025e-47
Identity = 106/200 (53.00%), Postives = 130/200 (65.00%), Query Frame = -1
Query:  119 APSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXGTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 715
            A S +R AV     +    + +  P   R      + A  +S    QAV A+    IK+           GTLNSD+ RD DLPLKERF++QPL P          A+DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++KPK+EK+SLK LTGKLF TI +LDHAAK+KSTPEAEKY+A T   L DVL+K+G
Sbjct:   20 ADSRTRTAVVVVRASAEGDRCAGGPRCDR------LVATASSPPLSQAVHAETVKTIKIGAPPPPSGGLPGTLNSDQTRDFDLPLKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKLG 213          
The following BLAST results are available for this feature:
BLAST of CF835872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSBQ2_ARATH3.793e-7064.16Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ_SPIOL3.211e-6963.56Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_ARATH2.229e-6261.95Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ_ONOVI2.550e-5858.77Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSJ8.489e-5456.52Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSI8.489e-5456.52Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_MAIZE7.186e-5353.85Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ2_MAIZE2.025e-4753.00Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02A18_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835872 ID=CF835872; Name=CF835872; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTTTTTTTTTCTCGATACTTTGAGCGGAACGCCAGCTTGCCATTA
ATTCACAGAAGTTGTTGCCTCACAAAATGAAAAATATAGTTTACATCAGA
TTATATTAATTCTGCTTAGCCAACCTTGGAGAGAACATCGTTCAGGGTAG
ATACAGTCTCCGCATAGTATTTCTCTGCTTCAGGAGTGCTCTTAATCTTT
GCCGCATGGTCAAGATTGCCGATGGTCTGGAAGAGCTTTCCAGTGAGGTT
CTTGAGGGATTGTTTCTCATCTTTGGGCTTAGCAGAAATGATAGTGTTGA
GGTCATAGCGAAGGTATGAGGCCCTGAGACGGAGATCATTCTGAACATAG
GGCCAGGCCTTCTTGTCTATTAATTCCTTGACATTAAGAATATCCTTTGC
TGACGCCTTTGCTCTCTCTGCTGCCTGGGCTGGACTAAGTGGTTGGATGA
AGAACCTCTCCTTCAGTGGCAGATCCAGGTCTCTTGGCTCATCAGAGTTC
AACGTTCCAGGCAATCCGCCAGAGGGTGGGGGAGGAGGACCAACTTTGAT
GGGAGTGGCATCAGCAAGTACAGCTTGAACAAAGGAACCTGAGGCCACAC
CTGCAGCAACAAGACCAAGCATAGCACGGCGGCTAGTTTCAGGCTCGTTT
GATGCCTGCTGGGCTCTAACAGTGAAACCAGGGCGAGCCACAGCAACTCT
GCTGTTGCTAGGGGCGTTCAAGCGGTTTGGGCCACTGAGCTGGAAGCTAC
CTTCAAGAACAGCCTGCGAGTGGGAGGATCCACGTAAGCCAGCCATTGAC
GCCATAGCTTGTGCCATTTTTCACTAAATCGGGTTTCAGAAACTTTGCTT
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