CF835881

Overview
NameCF835881
Unique NameCF835881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835881_ssr313 microsatellite CF835881_ssr313:313..324. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835881_ssr332 microsatellite CF835881_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1628 contig Csv1_Contig1628:36..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.278e-57
Identity = 116/211 (54.98%), Postives = 139/211 (65.88%), Query Frame = 3
Query:   39 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNE 671
            MA+TFSDLHTE G+KS++++L+GK+YISG+QL+ DD+KVYAAV VKP+D+FPNAS+WY+SV+S +A SFPGKAVGV+                                                            VL+DVKPWDDETDMKKLEEAVR VEMPGLFWGASKLVPVGYGIKK+ IM TI+DDLVS D+LIE+ LT EP NE
Sbjct:    1 MAVTFSDLHTEEGVKSVEEHLAGKTYISGDQLSVDDVKVYAAVPVKPSDAFPNASKWYESVASQLAKSFPGKAVGVQFGGSAAAAPAVEAEAPAAAADDDDDMDLFGDETEEEKKAAEEREAAKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNE 211          
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 220.32 bits (560), Expect = 8.281e-57
Identity = 117/214 (54.67%), Postives = 136/214 (63.55%), Query Frame = 3
Query:   39 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNETKQ 680
            MA+TF+DLHT  GLK+L+Q+LSGK+Y+SGN ++KDDIKV+AAV  KP   FPNA+RWYD+V++ +A  FPGKAVGV                                                             VLLDVKPWDDETDMKKLEEAVRSV+M GL WGASKLVPVGYGIKK+QIM+TI+DDLVSVDSLIEEHLT EP NE  Q
Sbjct:    1 MAVTFTDLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAADERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQ 214          
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.019e-30
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 3
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNE 671
            VLL+VKPWDDETDMKKLEEAVRSV+MPGL WGASKLVPVGYGIKK+ IMMTI+DDLVSVD+LIE+HLT EP NE
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNE 215          

HSP 2 Score: 123.25 bits (308), Expect = 1.378e-27
Identity = 56/77 (72.73%), Postives = 69/77 (89.61%), Query Frame = 3
Query:   39 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVR 269
            MA+TFSDLHTE GLK+L+++L+GK+YISG+QL+ DD+KVYAAVL  P D FPNAS+WYDSV+SH+A SFPGKA GVR
Sbjct:    1 MAVTFSDLHTERGLKTLEEHLAGKTYISGDQLSVDDVKVYAAVLENPGDGFPNASKWYDSVASHLAKSFPGKADGVR 77          
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 61/77 (79.22%), Postives = 70/77 (90.91%), Query Frame = 3
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNETKQ 680
            VL+D+KPWDDETDMKKLEEAVRS++M GLFWGASKLVPVGYGIKK+ IM TI+DDLVS+D++IEE LTVEP NE  Q
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQ 221          
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.874e-30
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 3
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNETKQ 680
            VL+D+KPWDDETDMKKLEEAV+S++M GLFWGASKLVPVGYGIKK+QI+ TI+DDLVS+D++IEE LTVEP NE  Q
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQ 221          
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 3
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNE 671
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKK+QIMMTI+DDLVSVDSLIE++   EP NE
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANE 213          

HSP 2 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 32/68 (47.06%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   39 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPS 242
            MAIT S++++E+GL+ LD+YL  +SYISG Q +KDD+ V+ ++   PA S+ N +RWYD +S+ +  S
Sbjct:    1 MAITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSS 68          
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 3
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNE 671
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKK+QIMMTI+DDLVSVDSLIE++   EP NE
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANE 216          
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28
Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = 3
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNE 671
            VLLDVKPWDDETDM KLEEAVRS++M GL WGASKLV VGYGIKK+QIM+TI+DDLVSVD L+E++LT EP NE
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANE 213          

HSP 2 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 3
Query:   39 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASRWYDSVSS 227
            MA+TF DL +E+GL+ LD+YL  +SYISG Q +KDD+ V+AA+   P+  + N SRWY+ V +
Sbjct:    1 MAVTFYDLSSEAGLEKLDEYLLSRSYISGYQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEA 63          
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 3
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNETKQ 680
            VLLDVKPWDDETDMKKLEEAVRSV+  GL  GASKLVPVGYGIKK+ IMMTI+DDLVSVD+LIE++LTVEP NE  Q
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQ 221          
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.176e-24
Identity = 57/77 (74.03%), Postives = 63/77 (81.82%), Query Frame = 3
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNETKQ 680
            VL+D+KPWDDETDMKKLEEAVRSV+M GL WGASKL+PVGYGIKK+QIM+TIIDDL S    IEE L   P NE  Q
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLASTP--IEEVLCEAPINEYVQ 206          

HSP 2 Score: 105.145 bits (261), Expect = 3.883e-22
Identity = 46/76 (60.53%), Postives = 65/76 (85.53%), Query Frame = 3
Query:   39 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGV 266
            MA+TFSDLHT  GLK+L+ +L+GK+YISG+ +TKDD+KV+AAV +KP+  FPNA+RWYD+V++ ++  FPG+A GV
Sbjct:    1 MAVTFSDLHTADGLKALEAHLAGKTYISGDGITKDDVKVFAAVPLKPSAEFPNAARWYDTVAAAVSSRFPGQASGV 76          
The following BLAST results are available for this feature:
BLAST of CF835881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1B2_ARATH1.278e-5754.98Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B_ORYSJ8.281e-5754.67Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1B1_ARATH1.019e-3086.49Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1D2_ARATH2.966e-3079.22Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH3.874e-3077.92Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D2_ORYSJ5.594e-2982.43Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D1_ORYSJ5.594e-2982.43Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D_PIMBR1.246e-2879.73Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D_BETVU1.627e-2881.82Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B_WHEAT3.176e-2474.03Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835881 ID=CF835881; Name=CF835881; organism=Citrus sinensis; type=EST; length=729bp
GTTGTGCGCATCTTCTTGCCTCTGCCTTGAAGACTAAAATGGCCATCACC
TTTTCAGATCTCCACACAGAGTCAGGCCTTAAGTCTCTTGATCAGTATCT
TTCTGGGAAATCTTATATCTCCGGTAATCAACTGACAAAAGATGACATCA
AGGTCTACGCTGCCGTTTTGGTGAAACCTGCTGATTCTTTCCCCAACGCC
AGCAGGTGGTACGACAGCGTTTCTTCACATATCGCCCCAAGCTTCCCTGG
CAAAGCCGTTGGTGTGAGAGTTGATGGCAAAGGTGCTCCAGTTGACGCCG
CCGCAGCCAAGCCTGCTGCTGCTGGAGGTGGTGATGATGATGATTTGGAT
CTCTTCGGAGATGAGACTGAGGAGGATAAGAAAGCAGCAGAGGAGAGGGA
GGCTGCTAAAAAGCAATCATCCAAGAAGAAAGAGAGTGGAAAATCATCGG
TACTTTTGGATGTAAAGCCTTGGGATGACGAGACAGACATGAAAAAGCTA
GAAGAGGCAGTTAGGAGTGTTGAGATGCCGGGTCTCTTTTGGGGAGCATC
AAAATTGGTCCCAGTCGGTTATGGGATTAAGAAGATGCAGATCATGATGA
CAATCATTGATGATCTTGTTTCTGTGGATTCACTCATAGAGGAACACCTC
ACAGTTGAGCCCTGCAATGAAACAAAGCAGGGTAATTTGTATCATAACTC
TTGGATCAGAACCAGAATTTCCCGTGATT
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