CF835888

Overview
NameCF835888
Unique NameCF835888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835888 vs. ExPASy Swiss-Prot
Match: SINA5_ARATH (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2)

HSP 1 Score: 320.087 bits (819), Expect = 6.688e-87
Identity = 146/165 (88.48%), Postives = 158/165 (95.76%), Query Frame = -2
Query:  175 VGDIPYLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 669
            VGDI +LVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVF CFGQYFCLHFEA+QLG APVYMAFLRFMGDE +AR+Y+YSLEVGG+GRK +WEGTPRS+RD HRKVRDSHDGLIIQRNMALFFSGGD+KELKLRVTGRIWKEQQNPD+GVCI ++CS
Sbjct:  144 VGDITFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFQCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEDDARNYTYSLEVGGSGRKQTWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDSGVCITSMCS 308          
BLAST of CF835888 vs. ExPASy Swiss-Prot
Match: SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.647e-85
Identity = 146/166 (87.95%), Postives = 157/166 (94.58%), Query Frame = -2
Query:  175 VVGDIPYLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 672
            +VGDIP+LVAHLRDDHKVDMH G TFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEA+QLG  PVYMAFLRFMGDE +ARSYSYSLEVGG+GRKL+WEGTPRSIRD HRKVRDS+DGLIIQRNMALFFSGGDRKELKLRVTG+IWKEQ +PD+G+ IPNL S
Sbjct:  161 IVGDIPFLVAHLRDDHKVDMHAGSTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMGPVYMAFLRFMGDEEDARSYSYSLEVGGSGRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVTGKIWKEQHSPDSGLSIPNLSS 326          
BLAST of CF835888 vs. ExPASy Swiss-Prot
Match: SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.151e-85
Identity = 148/166 (89.16%), Postives = 154/166 (92.77%), Query Frame = -2
Query:  181 VVGDIPYLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQ--NPDAGVCIPNL 672
            V GDIP+LVAHLRDDHKVDMH+GCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEA+QLG APVYMAFLRFMGDETEAR+Y+YSLEVGG GRKL WEGTPRS+RD HRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQ      G CIPNL
Sbjct:  160 VTGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYNYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQQSGEGGGACIPNL 325          
BLAST of CF835888 vs. ExPASy Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 9.375e-73
Identity = 125/152 (82.24%), Postives = 138/152 (90.79%), Query Frame = -2
Query:  217 VVGDIPYLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 672
            V GDIP LV HL+DDHKVDMH GCTFNHRYVKSNP EVENATWMLTVF+CFG+ FCLHFEA+QLG APVYMAFLRFMGDE EA+ +SYSLEVG +GRKL+W+G PRSIRD HRKVRDS DGLII RN+AL+FSGGDR+ELKLRVTGRIWKE+
Sbjct:  157 VTGDIPTLVVHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRVTGRIWKEE 308          
BLAST of CF835888 vs. ExPASy Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 8.775e-71
Identity = 122/152 (80.26%), Postives = 136/152 (89.47%), Query Frame = -2
Query:  217 VVGDIPYLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 672
            V GDIP LV HL+DDHKVDMH GCTFNHRYVKSNP EVENATWMLTVF+CFG+ FCLHFEA+QLG APVYMAFLRFMGDE EA+ +SYSLEVG + RKL+W+G PRSIRD HRKVRDS DGLII RN+AL+FSG D++ELKLRVTGRIWKE+
Sbjct:  154 VTGDIPTLVDHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVTGRIWKEE 305          
The following BLAST results are available for this feature:
BLAST of CF835888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SINA5_ARATH6.688e-8788.48E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis ... [more]
SINA4_ARATH1.647e-8587.95E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis ... [more]
SINA3_ARATH2.151e-8589.16E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis ... [more]
SINA2_ARATH9.375e-7382.24E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis ... [more]
SINA1_ARATH8.775e-7180.26Putative E3 ubiquitin-protein ligase SINAT1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02B02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835888 ID=CF835888; Name=CF835888; organism=Citrus sinensis; type=EST; length=673bp
TTTTTTTTTTTTTTTTTGGAAAAAAGGTTGTACAATTTACTGAACATTAA
AAAGCCATTCTCAGTTCCGTTACAACGGACCAGAAAACTTGACACAGCTT
CAACACACCAGAAAAATGTTCCAAACAAATCACAAATAAAAAAAAAAGAA
CTTGAATACAAAAATCACCTCTCAGCTACATAGGTTTGGTATGCACACGC
CAGCATCTGGATTCTGTTGTTCCTTCCATATCCTCCCAGTAACTCTTAGC
TTCAGCTCCTTCCTGTCCCCACCAGAGAAGAAAAGCGCCATGTTTCGTTG
GATGATAAGACCATCGTGGCTATCTCTGACCTTCCGGTGGCAATCCCGGA
TGCTTCGGGGTGTTCCCTCCCAACTGAGCTTCCTACCATTTCCCCCAACC
TCTAGGCTATAGCTATAGCTTCGAGCTTCAGTCTCATCACCCATAAAACG
GAGGAATGCCATGTAAACAGGAGCTGTCCCAAGCTGGTATGCTTCGAAAT
GAAGGCAGAAGTATTGACCAAAACAATGGAAAACTGTAAGCATCCATGTA
GCATTCTCTACTTCACGGGGATTGGACTTCACATAGCGATGATTGAATGT
GCATCCTGTGTGCATATCTACTTTGTGATCGTCCCTCAAATGGGCAACCA
AGTATGGGATGTCCCCAACGACA
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