CF835889

Overview
NameCF835889
Unique NameCF835889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835889 vs. ExPASy Swiss-Prot
Match: SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 3.892e-68
Identity = 123/184 (66.85%), Postives = 137/184 (74.46%), Query Frame = 3
Query:  108 MELDSIECVSSMDGLMDEDEISXXXXXXXXXXXQFASSKPHXXXXXXXXXXXXXXXXXXXXPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAH 659
            ME DS+ECVSS    + ++              QF+S+K H                    PTA APATSV+ELLECPVCT SMYPPIHQCHNGHTLCSTCK RVHNRCPTCRQELGDIRCLALEKVAESLELPCK+Y+LGCPEIFPYYSKLKHE +C FRPY+CPYAGS+C +VGDIP+LVAH
Sbjct:    1 METDSMECVSSTGNEIHQN-------GNGHQSYQFSSTKTHGGAAAAAVVTNIVG------PTATAPATSVYELLECPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYNLGCPEIFPYYSKLKHESLCNFRPYSCPYAGSECGIVGDIPFLVAH 171          
BLAST of CF835889 vs. ExPASy Swiss-Prot
Match: SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.261e-65
Identity = 119/184 (64.67%), Postives = 133/184 (72.28%), Query Frame = 3
Query:  108 MELDSIECVSSMDGLMDEDEISXXXXXXXXXXXQFASSKPHXXXXXXXXXXXXXXXXXXXXPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAH 659
            M+LDS++C S+MD + D++EI             +AS   H                       +   TSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCK RVHNRCPTCRQELGDIRCLALEKVAESLELPCK+  LGCPEIFPYYSKLKHE +C FRPY+CPYAGS+CSV GDIP+LVAH
Sbjct:    1 MDLDSMDCTSTMD-VTDDEEI-------HQDRHSYASVSKHHHTNNNTTNVNAAASG------LLPTTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELPCKHMSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVTGDIPFLVAH 170          
BLAST of CF835889 vs. ExPASy Swiss-Prot
Match: SINA5_ARATH (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 4.924e-63
Identity = 119/184 (64.67%), Postives = 132/184 (71.74%), Query Frame = 3
Query:  108 MELDSIECVSSMDGLMDEDEISXXXXXXXXXXXQFASSKPHXXXXXXXXXXXXXXXXXXXXPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAH 659
            ME DSI      D ++D+DEI            QF+S+K                         I+PATSV+ELLECPVCTNSMYPPIHQCHNGHTLCSTCK+RVHNRCPTCRQELGDIRCLALEKVAESLELPCKYY+LGC  IFPYYSKLKHE  C FRPY+CPYAGS+C+ VGDI +LVAH
Sbjct:    1 METDSI------DSVIDDDEIHQKH--------QFSSTKSQGGAT-----------------VVISPATSVYELLECPVCTNSMYPPIHQCHNGHTLCSTCKSRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYNLGCLGIFPYYSKLKHESQCNFRPYSCPYAGSECAAVGDITFLVAH 153          
BLAST of CF835889 vs. ExPASy Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.033e-53
Identity = 91/114 (79.82%), Postives = 98/114 (85.96%), Query Frame = 3
Query:  318 VHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAH 659
            V+ELLECPVCTN MYPPIHQC NGHTLCS CK RV N CPTCR ELG+IRCLALEKVAESLE+PC+Y +LGC +IFPYYSKLKHE  C FRPY CPYAGS+CSV GDIP LV H
Sbjct:   54 VYELLECPVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQNLGCHDIFPYYSKLKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVH 167          
BLAST of CF835889 vs. ExPASy Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.994e-52
Identity = 90/117 (76.92%), Postives = 100/117 (85.47%), Query Frame = 3
Query:  309 ATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAH 659
            +  V+ELLECPVCTN MYPPIHQC NGHTLCS+CK RV N CPTCR ELG+IRCLALEKVAESLE+PC+Y +LGC +IFPYYSKLKHE  C FR Y+CPYAGS+CSV GDIP LV H
Sbjct:   48 SNGVYELLECPVCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQNLGCQDIFPYYSKLKHEQHCRFRSYSCPYAGSECSVTGDIPTLVDH 164          
BLAST of CF835889 vs. ExPASy Swiss-Prot
Match: SINA_SCHMA (E3 ubiquitin-protein ligase sina OS=Schistosoma mansoni GN=SINA PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.934e-29
Identity = 57/126 (45.24%), Postives = 83/126 (65.87%), Query Frame = 3
Query:  294 TAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDI----PYLVAH 659
            T+ + +  +  L ECPVC +   PPI QC +GH +C++C++++ + CPTCR  L +IR LA+EK+A S+  PCKY   GCPE F Y SK +HE  C +RPY+CP  G+ C  +G++    P+LV H
Sbjct:  112 TSDSSSIDLASLFECPVCMDYALPPIMQCQSGHIVCASCRSKLSS-CPTCRGNLDNIRNLAMEKLASSVLFPCKYSTSGCPETFHYTSKSEHEAACEYRPYDCPCPGASCKWLGELEQVMPHLVHH 236          
BLAST of CF835889 vs. ExPASy Swiss-Prot
Match: SIAH1_DANRE (E3 ubiquitin-protein ligase Siah1 OS=Danio rerio GN=siah1 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 9.699e-27
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  303 APATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAH 659
            A  + +  L ECPVC + + PPI QC +GH +CS C+ ++   CPTCR  LG IR LA+EKVA S+  PCKY   GC    P+  K +HE +C FRPY+CP  G+ C   G +  ++ H
Sbjct:   30 ASNSDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEVTLPHTDKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPH 147          
BLAST of CF835889 vs. ExPASy Swiss-Prot
Match: SIAH1_RAT (E3 ubiquitin-protein ligase SIAH1 OS=Rattus norvegicus GN=Siah1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.654e-26
Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 3
Query:  327 LLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAH 659
            L ECPVC + + PPI QC +GH +CS C+ ++   CPTCR  LG IR LA+EKVA S+  PCKY   GC    P+  K +HE +C FRPY+CP  G+ C   G +  ++ H
Sbjct:   38 LFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPH 147          
BLAST of CF835889 vs. ExPASy Swiss-Prot
Match: SIA1A_MOUSE (E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus GN=Siah1a PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.654e-26
Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 3
Query:  327 LLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAH 659
            L ECPVC + + PPI QC +GH +CS C+ ++   CPTCR  LG IR LA+EKVA S+  PCKY   GC    P+  K +HE +C FRPY+CP  G+ C   G +  ++ H
Sbjct:   38 LFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPH 147          
BLAST of CF835889 vs. ExPASy Swiss-Prot
Match: SIAH1_HUMAN (E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens GN=SIAH1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.822e-26
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  327 LLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAH 659
            L ECPVC + + PPI QC +GH +CS C+ ++   CPTCR  LG IR LA+EKVA S+  PCKY   GC    P+  K  HE +C FRPY+CP  G+ C   G +  ++ H
Sbjct:   38 LFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPH 147          
The following BLAST results are available for this feature:
BLAST of CF835889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
SINA4_ARATH3.892e-6866.85E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis ... [more]
SINA3_ARATH5.261e-6564.67E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis ... [more]
SINA5_ARATH4.924e-6364.67E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis ... [more]
SINA2_ARATH6.033e-5379.82E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis ... [more]
SINA1_ARATH2.994e-5276.92Putative E3 ubiquitin-protein ligase SINAT1 OS=Ara... [more]
SINA_SCHMA7.934e-2945.24E3 ubiquitin-protein ligase sina OS=Schistosoma ma... [more]
SIAH1_DANRE9.699e-2745.38E3 ubiquitin-protein ligase Siah1 OS=Danio rerio G... [more]
SIAH1_RAT1.654e-2647.75E3 ubiquitin-protein ligase SIAH1 OS=Rattus norveg... [more]
SIA1A_MOUSE1.654e-2647.75E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus... [more]
SIAH1_HUMAN2.822e-2647.75E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835889 ID=CF835889; Name=CF835889; organism=Citrus sinensis; type=EST; length=659bp
AAAAAAAAACAATCTTTGGAGAAGAAGAGAGAAAAAGAAAGATACCCATT
CCAAGTTTTTGATTAAAAATTGAAAAAAAATTGTTGTTGATTTTGTTTTA
TTGTCAGATGGAATTGGATAGTATTGAGTGTGTGTCATCCATGGATGGGT
TGATGGATGAGGATGAGATCAGCCATCATCACCATCCTCCTCTTCTTCAT
CACCATCAATTTGCATCATCAAAGCCTCACAATAATGCCATCAACAACAA
TAATGCAGCAAACACTAATGGCATCAATGGTATTGTGGGTCCCACGGCGA
TCGCCCCTGCCACCAGTGTTCATGAGTTGCTTGAATGCCCTGTTTGCACC
AATTCTATGTACCCACCAATACATCAGTGCCACAATGGACACACACTTTG
TTCCACTTGTAAAACAAGGGTACACAACCGGTGCCCCACTTGTAGACAGG
AGCTCGGAGATATTAGGTGTTTAGCATTGGAGAAGGTGGCTGAATCACTT
GAACTGCCATGCAAGTATTACCACCTGGGTTGCCCAGAGATATTTCCATA
TTACAGCAAACTTAAACATGAGGTTATGTGCACCTTCAGACCGTATAACT
GCCCATATGCTGGGTCAGATTGCTCTGTCGTTGGGGACATCCCATACTTG
GTTGCCCAT
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