CF835891

Overview
NameCF835891
Unique NameCF835891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:337..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 6.755e-86
Identity = 150/161 (93.17%), Postives = 159/161 (98.76%), Query Frame = -2
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            TNENFRLLYDTKGRFRLHS+RDEE+KFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLE NKITDFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPKGKGIKL+I+EEA+KR
Sbjct:   91 TNENFRLLYDTKGRFRLHSIRDEESKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTILEEAKKR 251          
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 7.469e-85
Identity = 148/161 (91.93%), Postives = 158/161 (98.14%), Query Frame = -2
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            TNENFRLLYDTKGRFRLHSLRDEE+KFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE NKI DFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKG+KPWVSLPKGKGIKL+IIE+ARKR
Sbjct:   95 TNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDARKR 255          
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 312.768 bits (800), Expect = 1.274e-84
Identity = 147/161 (91.30%), Postives = 158/161 (98.14%), Query Frame = -2
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            TNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLEENKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:   95 TNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.274e-84
Identity = 147/161 (91.30%), Postives = 158/161 (98.14%), Query Frame = -2
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            TNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLEENKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:   95 TNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 310.457 bits (794), Expect = 6.322e-84
Identity = 146/161 (90.68%), Postives = 157/161 (97.52%), Query Frame = -2
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            TNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:   95 TNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 6.990e-83
Identity = 143/161 (88.82%), Postives = 156/161 (96.89%), Query Frame = -2
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            TNEN+RLLYDTKGRFRLH +RDE+AKFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIK+DLE NKI DFIKFDVGN+VMVTGGRN GRVG+IKNREKHKGSFETIH++D+LGH+FATR+GNVFTIGKG+KPWVSLPKGKGIKLSIIEE RKR
Sbjct:   95 TNENYRLLYDTKGRFRLHPIRDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255          
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 303.138 bits (775), Expect = 1.009e-81
Identity = 142/161 (88.20%), Postives = 155/161 (96.27%), Query Frame = -2
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            T EN+RLLYDTKGRFRL S++DE+AKFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDP+IKANDTIK+DLE NKI DFIKFDVGN+VMVTGGRN GRVG+IKNREKHKGSFETIH++DALGH+FATRLGNVFTIGKG+KPWVSLPKGKGIKLSIIEE RKR
Sbjct:   95 TGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255          
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.249e-81
Identity = 144/161 (89.44%), Postives = 153/161 (95.03%), Query Frame = -2
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            TNE+FRLLYDTKGRF LH++  +E KFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE NKI DFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPK KGIKLSIIEEARKR
Sbjct:   95 TNEDFRLLYDTKGRFCLHAITGDETKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEARKR 255          
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 1.049e-62
Identity = 108/161 (67.08%), Postives = 133/161 (82.61%), Query Frame = -2
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            T ENFRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   95 TGENFRLIYDTKGRFAVHRITSEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4_BOVIN (40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3)

HSP 1 Score: 239.58 bits (610), Expect = 1.371e-62
Identity = 108/161 (67.08%), Postives = 133/161 (82.61%), Query Frame = -2
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            T ENFRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   95 TGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
The following BLAST results are available for this feature:
BLAST of CF835891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS4_PRUAR6.755e-8693.1740S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_SOLTU7.469e-8591.9340S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS42_ARATH1.274e-8491.3040S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH1.274e-8491.3040S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS43_ARATH6.322e-8490.6840S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS4_MAIZE6.990e-8388.8240S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS4_ORYSJ1.009e-8188.2040S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS4_GOSHI2.249e-8189.4440S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS4_CRIGR1.049e-6267.0840S ribosomal protein S4 OS=Cricetulus griseus GN=... [more]
RS4_BOVIN1.371e-6267.0840S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B04_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835891 ID=CF835891; Name=CF835891; organism=Citrus sinensis; type=EST; length=743bp
TTTTTTTTTTTTTTTTAAGAGATACATGAACTTAGATTAAATAGCTCCAT
AATAACATCCACCAAATAGTAGCTAAAATAAAAAAGGACAAAGCAGGTTC
AAAATTGTGCTGATAAAATAAAAATAAAGATTCATTTTTGCATCCGTCCT
ACTTCAGCTTTAGAGAGTGCCAATCAGCTCTAATTCAACAAGAAAAAACA
AAGCAGCAAAATGTATCCAAATTCATTGTAAAAGCTTAAGCAGCAGCCTG
GGCAGCCTGTCTCTTCCTAGCTTCCTCAATGATGGACAACTTAATACCCT
TGCCCTTAGGAAGTGACACCCATGGTTTTGAACCCTTCCCGATGGTGAAC
ACATTGCCTAGACGAGTTGCAAACTCATGACCAAGGGCATCTTGAATATG
GATGGTCTCAAAACTTCCCTTATGCTTTTCCCTGTTCTTGATGATTCCAA
CCCGACCTCTGTTTCTACCCCCAGTGACCATGACAATATTCCCAACATCA
AACTTGATGAAGTCAGTGATCTTGTTCTCTTCTAAGTCAAGTTTGATGGT
ATCATTGGCTTTGATGAGTGGGTCAGGGTAGCGGATGGTACGCCCATCAT
AGGTGTTGATGTATGGGATACCTTTCTGGCCAAACTGGACTGATCTAACT
TTGCAAAGCTTGAATTTTGCCTCCTCATCTCTGAGGGAATGGAGACGGAA
GCGACCCTTGGTGTCATAAAGGAGACGGAAGTTCTCGTTGGTC
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