CF835897

Overview
NameCF835897
Unique NameCF835897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5486 contig Csv1_Contig5486:196..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.944e-53
Identity = 109/157 (69.43%), Postives = 115/157 (73.25%), Query Frame = -1
Query:  237 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXAQGPGEKAVPAPQPAEGAKKA 707
            KDGFIIRKPTKIHSRSRAR+MK AK KGRHSGYGKRKGTREARLPTK+             +KYRE+KKIDKHMYHDMYM+VKGNVFKNKRVLMESI KSKAEKAREKTLSDQFEAKRAKN               A+GPG    P   PA  A  A
Sbjct:   46 KDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDVAPVAAPAPAATPA 202          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 2.020e-52
Identity = 113/163 (69.33%), Postives = 121/163 (74.23%), Query Frame = -1
Query:  231 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXAQGPG---EKAVPAPQPAE-GAKKAKK 707
            KDGFIIRKPTKIHSRSRAR++  AKRKGRHSGYGKRKGTREARLPTK+             +KYRE+KKID+HMYHDMYMKVKGNVFKNKRVLMESI KSKAEKAREKTLSDQFEAKRAKN               A+GPG     A P  Q AE  AKK+KK
Sbjct:   46 KDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDIPAAAPPAQTAEVPAKKSKK 208          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.639e-52
Identity = 113/163 (69.33%), Postives = 116/163 (71.17%), Query Frame = -1
Query:  231 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXAQGP--GEKAVP--APQPAEGAKKAKK 707
            KDGFIIRKPTKIHSRSRAR + EAKRKGRHSGYGKRKGTREARLPTKI              KYRESKKID+HMYHDMYMKVKGNVFKNKRVLMESI K KAEKAREKTL+DQFEAKR KN               AQGP  GE   P  APQ  E  KK  K
Sbjct:   46 KDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREERLAQGPGGGETTTPAGAPQQPEVTKKKSK 208          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.554e-36
Identity = 74/120 (61.67%), Postives = 88/120 (73.33%), Query Frame = -1
Query:  348 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAK 707
            KDG II+KP  +HSR R R+  EA+RKGRH G+GKRKGT  AR+PTK+             +KYR+SKKID+H+YHD+YMK KGNVFKNKRVLME I K KAEK R K L+DQ EA+R K
Sbjct:   46 KDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQK 165          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.316e-35
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  348 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAK 707
            KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME I K KA+KAR+K L+DQ EA+R+K
Sbjct:   46 KDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.316e-35
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  348 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAK 707
            KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME I K KA+KAR+K L+DQ EA+R+K
Sbjct:   46 KDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.316e-35
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  348 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAK 707
            KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME I K KA+KAR+K L+DQ EA+R+K
Sbjct:   46 KDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.316e-35
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  348 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAK 707
            KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME I K KA+KAR+K L+DQ EA+R+K
Sbjct:   46 KDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.316e-35
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  348 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAK 707
            KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME I K KA+KAR+K L+DQ EA+R+K
Sbjct:   46 KDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.316e-35
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  348 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAK 707
            KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME I K KA+KAR+K L+DQ EA+R+K
Sbjct:   46 KDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
The following BLAST results are available for this feature:
BLAST of CF835897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RL191_ARATH6.944e-5369.4360S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL193_ARATH2.020e-5269.3360S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL192_ARATH2.639e-5269.3360S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL19_DROME1.554e-3661.6760S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19_RAT1.316e-3560.8360S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB1.316e-3560.8360S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]
RL19_MOUSE1.316e-3560.8360S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA1.316e-3560.8360S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN1.316e-3560.8360S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]
RL19_BOVIN1.316e-3560.8360S ribosomal protein L19 OS=Bos taurus GN=RPL19 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835897 ID=CF835897; Name=CF835897; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTTTTTTAATGAACATAATACCTCATCCCCTTTCATAACA
AGAAAACTACAAACGGGTTCATATGGGTTCCCACATTCAAGGCGTTTATA
AGTAAATAATTTGCCATTAAACAGAAAACAAAATAACTTGGGAAACAAAC
TCCTACAAAGAAACCAGAACCAACATTAACATATATAAGTTATCAATCTT
CAGTCTCCATCATCGATGTATCAGCGATCACTTCTTAGCTTTCTTAGCTC
CCTCAGCTGGTTGGGGTGCTGGTACTGCCTTCTCTCCAGGTCCCTGTGCT
AGTCGCTCTTCTCTCCTGGCCAGCTTTCTCTCCCTGCTGGCCTTGTTCTT
GGCGCGCTTAGCCTCAAACTGGTCAGAAAGAGTCTTCTCTCTTGCCTTTT
CAGCCTTTGACTTGGGGATACTCTCCATGAGGACACGCTTGTTCTTAAAT
ACATTACCCTTGACCTTCATGTACATGTCATGGTACATGTGCTTGTCAAT
TTTCTTCGACTCACGGTATTTGCGGAGCAACCGCCTGAGCACACGCATCC
TTCTCATCCAGAGGATTTTGGTGGGAAGCCTCGCCTCCCTAGTACCCTTT
CTCTTACCATATCCAGAGTGACGGCCCTTCCTCTTGGCTTCCTTCATTCT
GCGAGCGCGAGAACGGGAGTGGATCTTTGTTGGCTTCCTGATGATGAAAC
CATCCTT
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