CF835903
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835903 vs. ExPASy Swiss-Prot
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 2.734e-42 Identity = 79/87 (90.80%), Postives = 84/87 (96.55%), Query Frame = 3 Query: 3 MQASDTFNINSPLQHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGRERYNFMHKMLLPCGLPPEREDD 263 MQASD FNINS L+HLQAKYVGTGHADL+RFEWAVNIQRDSYASYIGHYPML+YFAIAENESIGRERYNFM KMLLPCGLPPERE++ Sbjct: 1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87
BLAST of CF835903 vs. ExPASy Swiss-Prot
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 2.734e-42 Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 3 Query: 3 MQASDTFNINSPLQHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGRERYNFMHKMLLPCGLPPEREDD 263 MQASD FNINS L+HLQAKYVGTGHADL+RFEW VNIQRDSYASYIGHYPML+YFAIAENESIGRERYNFM KMLLPCGLPPERED+ Sbjct: 1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87
BLAST of CF835903 vs. ExPASy Swiss-Prot
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.044e-25 Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 3 Query: 15 DTFNINSPLQHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGRERYNFMHKMLLPCGLPPEREDD 263 + +NI+S L+HLQ+KY+GTGHAD +FEW N RDS ASY+GHY +L YFAIAENES R R+N M +ML PCG PPE+ +D Sbjct: 3 ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKLED 85
BLAST of CF835903 vs. ExPASy Swiss-Prot
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.969e-24 Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 3 Query: 12 SDTFNINSPLQHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGRERYNFMHKMLLPCGLPPEREDD 263 +D + I+S L+HLQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YFAIAENES R R+N M KML PCG P ++ ++ Sbjct: 2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
BLAST of CF835903 vs. ExPASy Swiss-Prot
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.969e-24 Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 3 Query: 12 SDTFNINSPLQHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGRERYNFMHKMLLPCGLPPEREDD 263 +D + I+S L+HLQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YFAIAENES R R+N M KML PCG P ++ ++ Sbjct: 2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
BLAST of CF835903 vs. ExPASy Swiss-Prot
Match: SF3B5_MOUSE (Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.843e-23 Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 3 Query: 12 SDTFNINSPLQHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGRERYNFMHKMLLPCGLPPEREDD 263 +D + I+S L+HLQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YFAIAENES R R+N M KML P G P ++ ++ Sbjct: 2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEE 85
BLAST of CF835903 vs. ExPASy Swiss-Prot
Match: SF3B5_DICDI (Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.037e-21 Identity = 45/84 (53.57%), Postives = 63/84 (75.00%), Query Frame = 3 Query: 12 SDTFNINSPLQHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGRERYNFMHKMLLPCGLPPEREDD 263 S+ ++NS L+HLQ +YVGTGHAD+++ EW N RDS +S+IGH L+ F+IAENES+GR RYN + KM+ PCG P+ +D+ Sbjct: 2 SERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPKIKDN 85
BLAST of CF835903 vs. ExPASy Swiss-Prot
Match: YHV5_SCHPO (Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe GN=SPBC211.05 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 4.115e-14 Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 3 Query: 12 SDTFNINSPLQHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGRERYNFMHKMLLPCGLPP 248 +D + L+ LQA+YVG G+A ++EW VN RD+ +S +GH P+LAY A A E + R N + KM++PCG PP Sbjct: 2 ADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80 The following BLAST results are available for this feature:
BLAST of CF835903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835903 ID=CF835903; Name=CF835903; organism=Citrus sinensis; type=EST; length=455bpback to top |