CF835908

Overview
NameCF835908
Unique NameCF835908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig483 contig Csv1_Contig483:1..563. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC_MEDSA (Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.502e-35
Identity = 73/96 (76.04%), Postives = 79/96 (82.29%), Query Frame = -3
Query:  290 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKALPYSC 577
            IIK RKLS AL AAS ACDHIRDWV GTP+G +VS G Y DGSYNVP G+IYSFPVT  NGEW I QGL+IDEFSRKKLDLT EEL+EEK L +SC
Sbjct:  235 IIKARKLSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCANGEWKIVQGLSIDEFSRKKLDLTAEELTEEKNLAHSC 330          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC2_ARATH (Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.347e-35
Identity = 73/96 (76.04%), Postives = 77/96 (80.21%), Query Frame = -3
Query:  290 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKALPYSC 577
            IIK RKLS AL AAS ACDHIRDWV GTPEG +VS G Y DGSYNVP G+IYSFPVT RNGEW I QGL ID+ SRKK+DLT EEL EEK L YSC
Sbjct:  235 IIKARKLSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLPIDDASRKKMDLTAEELKEEKDLAYSC 330          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC_BETVU (Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.456e-35
Identity = 71/96 (73.96%), Postives = 76/96 (79.17%), Query Frame = -3
Query:  290 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKALPYSC 577
            IIK RKLS AL AAS ACDHIRDWV GTPEG WVS G Y DGSYNVP G+IYSFPVT ++GEW I QGL IDE SR+K+D T  EL EEKAL YSC
Sbjct:  235 IIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKDGEWKIVQGLPIDEVSRQKMDATGAELVEEKALAYSC 330          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC1_ARATH (Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 7.456e-35
Identity = 72/96 (75.00%), Postives = 77/96 (80.21%), Query Frame = -3
Query:  290 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKALPYSC 577
            IIK RKLS AL AAS ACDHIRDWV GTPEG +VS G Y DGSY+VP G+IYSFPVT RNG+W I QGL IDE SRKK+DLT EEL EEK L YSC
Sbjct:  235 IIKARKLSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIVQGLPIDEVSRKKMDLTAEELKEEKDLAYSC 330          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC_MESCR (Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.169e-34
Identity = 70/96 (72.92%), Postives = 74/96 (77.08%), Query Frame = -3
Query:  290 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKALPYSC 577
            IIK RKLS AL AAS ACDHI DWV GTPEG WVS G Y DGSYNVP G+IYSFPVT +NGEW I QGL ID+ SRKK+D T  EL EEK L YSC
Sbjct:  235 IIKARKLSSALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKNGEWTIVQGLPIDDDSRKKMDATAAELVEEKTLAYSC 330          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC_ORYSJ (Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.406e-33
Identity = 70/96 (72.92%), Postives = 74/96 (77.08%), Query Frame = -3
Query:  290 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKALPYSC 577
            IIK RK S AL AAS ACDHIRDWV GTPEG +VS G Y DGSY VP G+IYSFPVT   GEW I QGL IDEFSRKK+D T +ELSEEK L YSC
Sbjct:  235 IIKARKQSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCSGGEWTIVQGLPIDEFSRKKMDATAQELSEEKTLAYSC 330          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC_MAIZE (Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.837e-33
Identity = 69/96 (71.88%), Postives = 74/96 (77.08%), Query Frame = -3
Query:  290 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKALPYSC 577
            IIK RK S AL AAS ACDHIRDWV GTPEG +VS G Y DGSY VP G+IYSFPVT   GEW I QGL IDEFSRKK+D T +EL+EEK L YSC
Sbjct:  235 IIKARKFSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIVQGLPIDEFSRKKMDATAQELTEEKTLAYSC 330          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_SACD2 (Malate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=mdh PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.838e-23
Identity = 52/90 (57.78%), Postives = 60/90 (66.67%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            IIK R  S A  AA+ A  H+RDW  GTPE  WVS G Y DGSY +  G+IYSFP   +NG+W I QGLTIDEFSR K+  T  EL EE+
Sbjct:  229 IIKARGASSAASAANAAIFHMRDWALGTPENDWVSMGVYSDGSYGIEEGLIYSFPCVCKNGDWEIVQGLTIDEFSRAKMTATENELKEER 318          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC_FELCA (Malate dehydrogenase, cytoplasmic OS=Felis catus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.117e-22
Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGS-YNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            +IK RKLS A+ AA   CDH+RD  FGTPEG +VS G   DG+ Y VP  ++YSFPVT +N  W + +GLTI++FSR+K+DLT +EL+EEK
Sbjct:  234 VIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNPYGVPDDLLYSFPVTIKNKTWKVVEGLTINDFSREKMDLTAKELAEEK 324          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_DEIGD (Malate dehydrogenase OS=Deinococcus geothermalis (strain DSM 11300) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.459e-22
Identity = 51/90 (56.67%), Postives = 62/90 (68.89%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R  S A  AAS A DH+RDW  GTPEG WVS     DGSY +P G+IY FPV  RNG++ I QGL I +FSR+K+D T +EL EE+
Sbjct:  235 IIEARGASSAASAASAAIDHMRDWALGTPEGEWVSMAVPSDGSYGIPEGLIYGFPVRCRNGQYEIVQGLEISDFSRQKMDATAKELEEER 324          
The following BLAST results are available for this feature:
BLAST of CF835908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
MDHC_MEDSA1.502e-3576.04Malate dehydrogenase, cytoplasmic OS=Medicago sati... [more]
MDHC2_ARATH3.347e-3576.04Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis... [more]
MDHC_BETVU7.456e-3573.96Malate dehydrogenase, cytoplasmic OS=Beta vulgaris... [more]
MDHC1_ARATH7.456e-3575.00Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis... [more]
MDHC_MESCR2.169e-3472.92Malate dehydrogenase, cytoplasmic OS=Mesembryanthe... [more]
MDHC_ORYSJ1.406e-3372.92Malate dehydrogenase, cytoplasmic OS=Oryza sativa ... [more]
MDHC_MAIZE1.837e-3371.88Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2... [more]
MDH_SACD23.838e-2357.78Malate dehydrogenase OS=Saccharophagus degradans (... [more]
MDHC_FELCA1.117e-2257.14Malate dehydrogenase, cytoplasmic OS=Felis catus G... [more]
MDH_DEIGD1.459e-2256.67Malate dehydrogenase OS=Deinococcus geothermalis (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835908 ID=CF835908; Name=CF835908; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTCCTTAAACAAAAAAAAAATTGTTATTGATAGTT
TGATACATAAATCACAAGGGGCCTTTAATATCCATTTATCCAGGAAAAGT
AACAAAACTCCAAAATCCCGATTTTCAAATGCAAAAATAACAACATAAAA
TGGAAAGGCTTCTCCCTCATCAAGGGGTCCCCCAGGTTTCAACAAGGGTT
TTATTCAAAACTGGAACTATACCAACTACTCAAACAAAGCTAAGGGCCTT
GGTAACCCACTATTGAAGGGAAAAAAGCTTTTAAAAAAAACATGAGTATG
GGAGGGCCTTCTCCTCGGAAAGCTCCTCTGGTGTCAAGTCCAACTTCTTC
CTTGAAAATTCATCAATGGTGAGTCCTTGAAAAATTGGCCATTCACCGTT
GCGGGAGGTTACTGGGAATGAATAAATGACCCCACCTGGGACATTGTATG
AACCATCAAAGTATCCCCCCTTGGAAACCCAGGGGCCCTCAGGAGTTCCA
AAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGAGC
CCTCGAGAGCTTTCTGGGTTTGATGATTG
back to top