CF835926

Overview
NameCF835926
Unique NameCF835926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835926 vs. ExPASy Swiss-Prot
Match: CCA21_ARATH (Cyclin-A2-1 OS=Arabidopsis thaliana GN=CYCA2-1 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.020e-22
Identity = 81/233 (34.76%), Postives = 116/233 (49.79%), Query Frame = 3
Query:  105 MPRSSSRHVNINKENKTHAKIEEPTSRITRAKAKALGTSGGIFPSSKPTFKPDHKHVLRMNSKRGASDENKASVTATSGIQHKRRAVLKDVTNICENSHRNYSSFAKIQTRKQPSSSPPKKIAKVSSDVCAENLLVEEDVKEKLAEELSKIRMGEPQEVT---ENTSECGKADRNHPTHVSEKPFGLQGHQMREENNLCEELQSNGPSIVNIDSNLEDPQVCSLYAPDIYNNI 794
            M R+SS+H N  KE  + +KI +   R+TR++AKALG S      SKP FK + K V R ++KR ASD    ++T  +    KRRAVLKDVTN    S  +     K+           K+  K +  +  + L+  +  K KLAE+LSKIRM E  + +   +   +C + DR+  T   +                          IV+IDS ++DPQ CSLYA  IY++I
Sbjct:    1 MHRASSKHTNAKKEAISTSKIRDNNVRVTRSRAKALGVSNS---PSKPAFKHETKRVARPSNKRMASD----NITVCN---QKRRAVLKDVTNTLAESIISTEGNVKVAC---------KRGGKETKQIEEDGLVDVDGEKSKLAEDLSKIRMVESLDASASKQKLVDCAEEDRSDVTDCVQ--------------------------IVDIDSGVQDPQFCSLYAASIYDSI 188          
BLAST of CF835926 vs. ExPASy Swiss-Prot
Match: CCA21_ORYSJ (Cyclin-A2-1 OS=Oryza sativa subsp. japonica GN=CYCA2-1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.488e-21
Identity = 74/234 (31.62%), Postives = 114/234 (48.72%), Query Frame = 3
Query:  141 KENKTHAKIEEPTSRITRAKAKALGTSGGIFPSSKPTFKPDHKHVLRMNSKRGASDENKASVTATSGIQHKRRAVLKDVTNI-CENSHRNYSSFAKIQTRKQPS---------SSPPKKIAKVSSDVCAENLLVEEDVKEKLAEELSKIRM----GEPQEVTENTS--ECGKADRNHPTHVSEKPFGLQGHQMREENNLCEELQSNGPSIVNIDSNLEDPQVCSLYAPDIYNNI 794
            KEN      + P+ RITRA+A A     G  PS     + + K   +  +KRGA DE  ++ TATS  Q KRR VLKDVTNI C NS +N ++ +K+Q + +P+             KK+ K+     A    V   +  K +EE  K+ +     EP  + EN         +RN  ++  E  F  +    + E    +   S+G   ++ID++  +PQ+C+ YA +IY N+
Sbjct:    5 KENPVLTACQAPSGRITRAQAAANRGRFGFAPSVSLPARTERKQTAKGKTKRGALDEITSASTATSAPQPKRRTVLKDVTNIGCANSSKNCTTTSKLQQKSKPTQRVKQIPSKKQCAKKVPKLPPPAVAGTSFV---IDSKSSEETQKVELLAKAEEPTNLFENEGLLSLQNIERNRDSNCHEAFFEARNAMDKHELADSKPGDSSGLGFIDIDNDNGNPQMCASYASEIYTNL 235          
BLAST of CF835926 vs. ExPASy Swiss-Prot
Match: CCA22_ARATH (Cyclin-A2-2 OS=Arabidopsis thaliana GN=CYCA2-2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.448e-20
Identity = 81/229 (35.37%), Postives = 111/229 (48.47%), Query Frame = 3
Query:  114 SSSRHVNINKENKTHAKIEEPTSRITRAKAKALGTSGGIFPSSKPTFKPDHKHVLRMNSKRGASDENKASVTATSGIQHKRRAVLKDVTNICENSHRNYSSFAKIQTRK--QPSSSPPKKIAKVSSDVCAENLLVEEDVKEKLAEELSKIRMGEPQEVTENTSECGKADRNHPTHVSEKPFGLQGHQMREENNLCEELQSNGPSIVNIDSNLEDPQVCSLYAPDIYNNI 794
            SSS H N NKEN + + ++E   RITR++AK     G   P +KP+FK                             Q KRRAVLKDV+N   ++   YS   K    K  +     PKK AK  ++   + L+     K KLAE+LSKIRM E Q+V+ +  +           ++E        Q  + + + E LQ     +V+IDSN+EDPQ CSLYA DIY+NI
Sbjct:    4 SSSMHPNANKENISTSDVQESFVRITRSRAKKAMGRGVSIPPTKPSFK-----------------------------QQKRRAVLKDVSN--TSADIIYSELRKGGNIKANRKCLKEPKKAAKEGANSAMDILVDMHTEKSKLAEDLSKIRMAEAQDVSLSNFK--------DEEITE--------QQEDGSGVMELLQ-----VVDIDSNVEDPQCCSLYAADIYDNI 180          
BLAST of CF835926 vs. ExPASy Swiss-Prot
Match: CCA24_ARATH (Cyclin-A2-4 OS=Arabidopsis thaliana GN=CYCA2-4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 68/211 (32.23%), Postives = 101/211 (47.87%), Query Frame = 3
Query:  186 ITRAKAKALGTSGGIFPSSKPTFKPDHK-HVLRMNSKRGASDENKASVTATSGIQHKRRAVLKDVTNI-CENSHRNYSSFA-----KIQTRKQPSSSPPKKIAKVSSDVCAENLLVEEDVKEKLAEELSKIRMGEPQEVTENTSECGKADRNHPTHVSE-KPFGLQGHQMREENNLCEELQSNGPSIVNIDSNLEDPQVCSLYAPDIYNNI 794
            +TRA A AL  S  +  SS+      ++  VLR  SKR A DE KA+         K+RAVLKD+TN+ CENS+ +  S A     +I+  +Q SSS     +  +S V         D K ++    +   +    + +  T+E   +    P+  S  +PFG                 ++ P  V+IDS+ +DP +CSLYAPDIY N+
Sbjct:   19 VTRALASALRASSKLITSSEVAATTQNQGRVLRAKSKRTALDEKKANAP-------KKRAVLKDITNVTCENSYTSCFSVAVENIKQIKKGRQSSSSSKVASSSATSQVT--------DAKVEVVSNSAGASLSVFTDTSLGTNETSYSIIAKPSSRSPPRPFGTVERSCGG---------ASSPKFVDIDSDDKDPLLCSLYAPDIYYNL 205          
The following BLAST results are available for this feature:
BLAST of CF835926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CCA21_ARATH2.020e-2234.76Cyclin-A2-1 OS=Arabidopsis thaliana GN=CYCA2-1 PE=... [more]
CCA21_ORYSJ8.488e-2131.62Cyclin-A2-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA22_ARATH1.448e-2035.37Cyclin-A2-2 OS=Arabidopsis thaliana GN=CYCA2-2 PE=... [more]
CCA24_ARATH1.005e-1332.23Cyclin-A2-4 OS=Arabidopsis thaliana GN=CYCA2-4 PE=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02C05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835926 ID=CF835926; Name=CF835926; organism=Citrus sinensis; type=EST; length=794bp
ACGTACACTCTTCACTCTCTTTTCAAGAGCTCTTTTTGACCCGATTCGAA
AGGTCTCGGAGCTCCAAGTCACTCAGTCCAATGAACAGCATTTCAGATTA
AGTCATGCCTCGCTCTTCTTCAAGGCATGTGAACATAAATAAAGAAAATA
AAACTCATGCCAAAATTGAAGAGCCTACTTCACGGATCACACGAGCAAAA
GCTAAAGCCCTGGGAACATCAGGAGGGATATTTCCCTCCTCAAAACCTAC
CTTTAAACCAGATCACAAGCATGTTCTAAGAATGAATTCCAAAAGGGGAG
CGTCGGATGAGAACAAAGCTTCTGTGACTGCTACCTCAGGCATTCAGCAT
AAGAGAAGGGCTGTACTTAAAGATGTAACCAACATCTGTGAAAATTCGCA
TAGAAACTATAGTAGTTTTGCTAAAATTCAGACTAGAAAGCAACCTAGTA
GTAGTCCTCCAAAGAAGATTGCAAAGGTGTCTTCAGATGTCTGTGCAGAA
AATCTACTTGTTGAAGAAGATGTAAAAGAAAAGTTAGCTGAAGAATTGTC
AAAAATTAGGATGGGGGAACCACAGGAGGTGACAGAAAACACAAGTGAAT
GTGGCAAAGCAGATCGGAACCATCCAACACATGTTTCAGAGAAACCTTTT
GGACTCCAAGGCCATCAAATGAGAGAAGAAAACAACTTGTGCGAAGAACT
GCAATCAAATGGTCCAAGCATTGTGAATATTGATTCAAACCTGGAAGATC
CTCAAGTGTGCAGCTTATATGCCCCTGATATATACAATAATATA
back to top