CF835931

Overview
NameCF835931
Unique NameCF835931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:71..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835931 vs. ExPASy Swiss-Prot
Match: RL11_MEDSA (60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 6.963e-85
Identity = 162/180 (90.00%), Postives = 163/180 (90.56%), Query Frame = -1
Query:  167 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 706
            MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLE                GIQHRVTK+DAMKWFQVKYEGVILNKSQ I
Sbjct:    1 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180          
BLAST of CF835931 vs. ExPASy Swiss-Prot
Match: RL112_ARATH (60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2)

HSP 1 Score: 311.612 bits (797), Expect = 2.646e-84
Identity = 159/180 (88.33%), Postives = 164/180 (91.11%), Query Frame = -1
Query:  167 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 706
            MASEKKLSNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180          
BLAST of CF835931 vs. ExPASy Swiss-Prot
Match: RL111_ARATH (60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2)

HSP 1 Score: 311.612 bits (797), Expect = 2.646e-84
Identity = 159/180 (88.33%), Postives = 164/180 (91.11%), Query Frame = -1
Query:  167 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 706
            MASEKKLSNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180          
BLAST of CF835931 vs. ExPASy Swiss-Prot
Match: RL11_ORYSJ (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 7.206e-82
Identity = 155/178 (87.08%), Postives = 161/178 (90.45%), Query Frame = -1
Query:  173 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQ 706
            MASEKK SNPMREIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178          
BLAST of CF835931 vs. ExPASy Swiss-Prot
Match: RL11_ORYSI (60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 7.206e-82
Identity = 155/178 (87.08%), Postives = 161/178 (90.45%), Query Frame = -1
Query:  173 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQ 706
            MASEKK SNPMREIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178          
BLAST of CF835931 vs. ExPASy Swiss-Prot
Match: RL11_DROME (60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.847e-62
Identity = 121/177 (68.36%), Postives = 136/177 (76.84%), Query Frame = -1
Query:  182 TRMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILN 712
            T+        NPMR++ ++KL LNI VGESGDRLTRAAKVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G QHR+TKEDAMKWFQ KY+G+ILN
Sbjct:    5 TKKIKRDPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181          
BLAST of CF835931 vs. ExPASy Swiss-Prot
Match: RL11_SCHPO (60S ribosomal protein L11 OS=Schizosaccharomyces pombe GN=rpl11a PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.283e-62
Identity = 116/172 (67.44%), Postives = 136/172 (79.07%), Query Frame = -1
Query:  179 KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 694
            +K  NPM+E+++ KLVLNIS+GESGDRLTRAAKVLEQLSGQTPVFSKARYT+R FGIRRNEKIAC+VTVRG KA ++LE GLKVKEYEL +RNFS TG FGFGIQEHIDLGIKYDPS GIYGMDF+VV++                G  H++  ED + WF+ KY+ V+L K
Sbjct:    3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVLGK 174          
BLAST of CF835931 vs. ExPASy Swiss-Prot
Match: RL11_CAEEL (60S ribosomal protein L11 OS=Caenorhabditis elegans GN=rpl-11.1 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.283e-62
Identity = 120/171 (70.18%), Postives = 134/171 (78.36%), Query Frame = -1
Query:  185 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 697
            EKK  N MRE+K+QKL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVR+FGIRRNEKIA + TVRG KA ++LE GLKVKEYEL + NFSDTG FGFG+QEHIDLGIKYDP  GIYGMDF+VVL                 G  HRV KE+ +KWFQ KY+G+IL
Sbjct:   12 EKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182          
BLAST of CF835931 vs. ExPASy Swiss-Prot
Match: RL11_RAT (60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.413e-61
Identity = 117/166 (70.48%), Postives = 136/166 (81.93%), Query Frame = -1
Query:  185 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 682
            NPMRE++++KL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of CF835931 vs. ExPASy Swiss-Prot
Match: RL11_PONAB (60S ribosomal protein L11 OS=Pongo abelii GN=RPL11 PE=2 SV=3)

HSP 1 Score: 236.113 bits (601), Expect = 1.413e-61
Identity = 117/166 (70.48%), Postives = 136/166 (81.93%), Query Frame = -1
Query:  185 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 682
            NPMRE++++KL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSITDKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
The following BLAST results are available for this feature:
BLAST of CF835931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL11_MEDSA6.963e-8590.0060S ribosomal protein L11 OS=Medicago sativa GN=RP... [more]
RL112_ARATH2.646e-8488.3360S ribosomal protein L11-2 OS=Arabidopsis thalian... [more]
RL111_ARATH2.646e-8488.3360S ribosomal protein L11-1 OS=Arabidopsis thalian... [more]
RL11_ORYSJ7.206e-8287.0860S ribosomal protein L11 OS=Oryza sativa subsp. j... [more]
RL11_ORYSI7.206e-8287.0860S ribosomal protein L11 OS=Oryza sativa subsp. i... [more]
RL11_DROME2.847e-6268.3660S ribosomal protein L11 OS=Drosophila melanogast... [more]
RL11_SCHPO8.283e-6267.4460S ribosomal protein L11 OS=Schizosaccharomyces p... [more]
RL11_CAEEL8.283e-6270.1860S ribosomal protein L11 OS=Caenorhabditis elegan... [more]
RL11_RAT1.413e-6170.4860S ribosomal protein L11 OS=Rattus norvegicus GN=... [more]
RL11_PONAB1.413e-6170.4860S ribosomal protein L11 OS=Pongo abelii GN=RPL11... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835931 ID=CF835931; Name=CF835931; organism=Citrus sinensis; type=EST; length=715bp
GCTAAGCCATAATCTTGATAATAAAATTCCTTTAAACAAATAACAAAATA
TCTTGAACTACCAAAAGCATCTAACTCAGGTTTGCAAAACGCCAAGTAAT
AGCCAGTGTCTACAAACATCAACACTATAAATGCAAAATCGTCATCACAC
AAAGGGCTTAAGCACCAATATTCTGGGACTTGTTGAGGATCACACCTTCG
TATTTGACCTGGAACCATTTCATTGCATCTTCCTTCGTGACACGGTGCTG
AATCCCAACACGAGACTTGCACCTACGGCGTCGACCTACACGATAACCCG
GGCGCTCCAGAACCACAAAGAAATCCATACCATAAATTCCAGTGGAAGGA
TCATACTTGATTCCAAGATCAATATGCTCTTGAATACCAAAGCCAAAACA
GCCAGTGTCACTGAAATTCCGACGCAGAAGCTCATATTCCTTCACCTTCA
ATCCACTCTCCAAAAGCTGCATTGCCTTGTCACCTCTAACAGTCACATAG
CATGCAATCTTCTCATTACGTCTGATCCCAAAAGACCGAACAGTGTACCT
GGCCTTGGAGAAAACAGGTGTCTGTCCACTGAGTTGCTCCAGCACCTTAG
CGGCTCTGGTGAGACGATCTCCACTTTCACCAACGGAGATGTTGAGCACA
AGCTTCTGAACCTTAATTTCCCTCATGGGGTTCGAAAGTTTCTTCTCTGA
AGCCATTCGGGTTTG
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