CF835935

Overview
NameCF835935
Unique NameCF835935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11761 contig Csv1_Contig11761:628..1422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_ARATH (Anthranilate phosphoribosyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.137e-71
Identity = 137/190 (72.11%), Postives = 153/190 (80.53%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            E GIGFMMS  YHPAMK V PVRKKLK+KTVFNILGPMLNPA V +AVVGVY+++LV+KMA ALQRFG+KRALVVHS GLDEMSPLG GL+ DVT EKIE FSFDPLD+GIPRCTLE L+GGGP YNA+VLRRVLSGE G              LVS +V TLAEGV +ARE+Q SGKA+ TLD WI +S
Sbjct:  248 EGGIGFMMSPMYHPAMKIVGPVRKKLKIKTVFNILGPMLNPARVSYAVVGVYHKDLVVKMAKALQRFGMKRALVVHSCGLDEMSPLGGGLVYDVTPEKIEEFSFDPLDFGIPRCTLEDLRGGGPDYNADVLRRVLSGESGAIADSLILNAAAALLVSNRVQTLAEGVTVAREVQSSGKAIKTLDSWINIS 437          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_RUBXD (Anthranilate phosphoribosyltransferase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=trpD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.237e-32
Identity = 82/195 (42.05%), Postives = 113/195 (57.95%), Query Frame = -2
Query:  206 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG-ERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 784
            EAGIGFM +  +HPAM+ V PVR +L  +TVFN+LGP+ NPA     +VGV++   V  MA AL+  G +RALVVH  +G+DE++  GP L+ +V    +E +   P D+G+ R   + L GG    NA +LR VLSG ERG               V+ K  ++ EGV LA     SG AL  L+ ++ VS+ L
Sbjct:  143 EAGIGFMFARTHHPAMRHVAPVRAELPFRTVFNLLGPLTNPAGARRQLVGVFSAGYVRPMAEALEGLGAERALVVHGRDGMDEITVTGPTLVAEVGGGGVEEYEISPEDFGLSRHAPDGLLGGDAHLNARILRDVLSGEERGASRDVIVLNAGAAIYVAGKAPSIEEGVRLAEGSLESGAALAALERFVRVSRRL 337          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_METJA (Anthranilate phosphoribosyltransferase OS=Methanocaldococcus jannaschii GN=trpD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.237e-32
Identity = 72/187 (38.50%), Postives = 111/187 (59.36%), Query Frame = -2
Query:  221 GIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIE 778
            GIGF+ +  +HPAMKF  PVRK+L ++TVFN+LGP+ NPA   + ++GVY+E L  K+AN L+  GLK ALVVH  G+DE++ +G   I ++   +I+ +  +P D+GI +  LE ++GG    NA+++  +  GE  G               ++ +   + EG+ LA +    GKAL  L+  IE
Sbjct:  145 GIGFLFAPHFHPAMKFATPVRKELGIRTVFNVLGPLTNPANANYQLMGVYDEKLTEKLANVLKNLGLKGALVVHGSGMDEITTIGKTKISELRNGEIKSYYIEPEDFGIKKAKLEDIRGGDAEENAKIIGEIFEGEEVGAKRDIVVLNAAFALYIAEEAKDVEEGIKLAEKSIDEGKALKKLEDLIE 331          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_CHLFF (Anthranilate phosphoribosyltransferase OS=Chlamydophila felis (strain Fe/C-56) GN=trpD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.237e-32
Identity = 69/194 (35.57%), Postives = 109/194 (56.19%), Query Frame = -2
Query:  206 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF-GLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 784
            E GIGFM +  YHP++K + P+RK +K+ + FNILGP+LNPA   ++++GV NE ++  M+    +F   +R  + H  GLDE++ LG  +  D+ Q K  R   DP  +G   C +E L+GG    NA +L++  SG++G               +     TL EG+ +AR+  + G+AL  L+ W+  S+ L
Sbjct:  142 EVGIGFMFAPIYHPSLKKLAPIRKGMKIPSTFNILGPLLNPANTEYSLIGVSNEPILELMSEVCLQFQNTQRTFLFHGSGLDELTTLGKVVGYDIQQGKKTRIEIDPTSFGFASCKIEELKGGDSKMNAFILKKAFSGQQGAIADALIFNAGAAVWIFGNATTLEEGIQIARQTLMEGEALRVLEKWVAFSQQL 335          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_DEHSC (Anthranilate phosphoribosyltransferase OS=Dehalococcoides sp. (strain CBDB1) GN=trpD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.701e-32
Identity = 77/196 (39.29%), Postives = 123/196 (62.76%), Query Frame = -2
Query:  206 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERF--SFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 784
            + GIGFM +  +HPAMKFV P R+++ ++TVFNILGP+ NPA   + ++GV    L  K+ +AL    +K ALVVH  +G+DEMS  G  +I ++  ++I +F  +  P + G+ + +L++++GG    NA  LR +LSG +G              +V+ K++T+AEG++LA EI  +G ALN L+  I++S+ L
Sbjct:  143 QIGIGFMFAPVFHPAMKFVAPSRREIGIRTVFNILGPLTNPASAQYQLIGVPEIGLGDKIISALCHMDIKHALVVHGLDGMDEMSISGDSVIWELKDKEIIKFRHTVSPREMGLEQVSLQAVKGGAAEENALTLRAILSGAKGPKRDVVLLNAAAALMVADKIDTIAEGISLAAEIIDNGLALNKLESLIKLSQSL 338          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_DEHE1 (Anthranilate phosphoribosyltransferase OS=Dehalococcoides ethenogenes (strain 195) GN=trpD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.701e-32
Identity = 77/196 (39.29%), Postives = 123/196 (62.76%), Query Frame = -2
Query:  206 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERF--SFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 784
            + GIGFM +  +HPAMKFV P R+++ ++TVFNILGP+ NPA   + ++GV    L  K+ +AL    +K ALVVH  +G+DEMS  G  +I ++  ++I +F  +  P + G+ + +L++++GG    NA  LR +LSG +G              +V+ K++T+AEG++LA EI  +G ALN L+  I++S+ L
Sbjct:  143 QIGIGFMFAPVFHPAMKFVAPSRREIGIRTVFNILGPLTNPASAQYQLIGVPEIGLGDKIISALCHMDIKHALVVHGLDGMDEMSISGDSVIWELKDKEIIKFRHTVSPREMGLEQVSLQAVKGGAAEENALTLRAILSGAKGPKRDVVLLNAAAALMVADKIDTIAEGISLAAEIIDNGLALNKLESLIKLSQSL 338          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_RHILO (Anthranilate phosphoribosyltransferase OS=Rhizobium loti GN=trpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.139e-32
Identity = 73/190 (38.42%), Postives = 109/190 (57.37%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            EAG+GFM +  +HPAMK V P R +L  +T+FN+LGP+ NPA V   +VGV+    +L +A  L+  G + A VVH +G DE++  G   + ++   +I  F+  P + G+ R T + L+GG  AYNA  LR +L G  G              +++ K  TL +G+ALA +   SG+AL  LD  +E+S
Sbjct:  145 EAGVGFMFAPAHHPAMKHVGPTRVELGTRTIFNLLGPLSNPAGVVRQMVGVFLPEWILPVAETLKALGTEHAWVVHGDGYDEITTTGETQVAELIGGEIRSFTLTPEEVGLKRHTKDELRGGDAAYNANALRDMLDGAAGAYRDTVLMNAGAGLVIAGKATTLGDGIALAAQAIDSGRALQVLDRLVEIS 334          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_CHLSY (Anthranilate phosphoribosyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=trpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.139e-32
Identity = 83/194 (42.78%), Postives = 113/194 (58.25%), Query Frame = -2
Query:  212 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE-GLDEMSPLGPGLILDVTQEKIER-FSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG-ERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSK 784
            EAGIGFM + K+HPAM+F  PVR+++ ++TVFNILGP+ NPA   + V+GV +  L  K+A AL R     ALVVH + G+DE++  GP LI DV   +  R     P D G+PR   ++L+GG  AYN  ++R +LSG E G              +       LA GVA+AR    SG+AL  L+  I VS+
Sbjct:  144 EAGIGFMFAPKFHPAMRFAGPVRREIGIRTVFNILGPLTNPARARYQVLGVASAALAEKLAYALSRLDTVHALVVHGDGGVDELTLSGPNLIFDVRAGQAPRQMLVAPEDVGLPRAPQDALRGGDVAYNVAIVRAILSGEEHGPRRDVVLFNAAAAMVAGDLAPDLATGVAMARHSIDSGRALERLNQMIAVSR 337          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_CHLAA (Anthranilate phosphoribosyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.139e-32
Identity = 83/194 (42.78%), Postives = 113/194 (58.25%), Query Frame = -2
Query:  212 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE-GLDEMSPLGPGLILDVTQEKIER-FSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG-ERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSK 784
            EAGIGFM + K+HPAM+F  PVR+++ ++TVFNILGP+ NPA   + V+GV +  L  K+A AL R     ALVVH + G+DE++  GP LI DV   +  R     P D G+PR   ++L+GG  AYN  ++R +LSG E G              +       LA GVA+AR    SG+AL  L+  I VS+
Sbjct:  144 EAGIGFMFAPKFHPAMRFAGPVRREIGIRTVFNILGPLTNPARARYQVLGVASAALAEKLAYALSRLDTVHALVVHGDGGVDELTLSGPNLIFDVRAGQAPRQMLVAPEDVGLPRAPQDALRGGDVAYNVAIVRAILSGEEHGPRRDVVLFNAAAAMVAGDLAPDLATGVAMARHSIDSGRALERLNQMIAVSR 337          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_EUBR3 (Anthranilate phosphoribosyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=trpD PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.368e-31
Identity = 75/191 (39.27%), Postives = 109/191 (57.07%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            + G+ F  + KYH +MK+V P+RK+L  +TVFNILGP+ NP      ++GVY+E LV  +A  L   G+KR +VV+  + LDE+S      I ++           P D+G  RCT E L+GG P  NA+++R +L G++G               +  K +++ EG+ LA EI  SGKAL TLD  I+VS
Sbjct:  146 KVGMCFFFAQKYHTSMKYVGPIRKELGFRTVFNILGPLTNPGSPAMQLLGVYDEYLVEPLAQVLVSLGVKRGMVVYGMDKLDEISMSASTKICEIKDGWFRTTVISPEDFGFERCTKEDLKGGTPEENAKIVRDILGGQKGHKRNAVLMNAGASLYIGGKADSMKEGIELAAEIIDSGKALETLDKLIDVS 336          
The following BLAST results are available for this feature:
BLAST of CF835935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_ARATH5.137e-7172.11Anthranilate phosphoribosyltransferase, chloroplas... [more]
TRPD_RUBXD1.237e-3242.05Anthranilate phosphoribosyltransferase OS=Rubrobac... [more]
TRPD_METJA1.237e-3238.50Anthranilate phosphoribosyltransferase OS=Methanoc... [more]
TRPD_CHLFF1.237e-3235.57Anthranilate phosphoribosyltransferase OS=Chlamydo... [more]
TRPD_DEHSC4.701e-3239.29Anthranilate phosphoribosyltransferase OS=Dehaloco... [more]
TRPD_DEHE14.701e-3239.29Anthranilate phosphoribosyltransferase OS=Dehaloco... [more]
TRPD_RHILO6.139e-3238.42Anthranilate phosphoribosyltransferase OS=Rhizobiu... [more]
TRPD_CHLSY6.139e-3242.78Anthranilate phosphoribosyltransferase OS=Chlorofl... [more]
TRPD_CHLAA6.139e-3242.78Anthranilate phosphoribosyltransferase OS=Chlorofl... [more]
TRPD_EUBR31.368e-3139.27Anthranilate phosphoribosyltransferase OS=Eubacter... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835935 ID=CF835935; Name=CF835935; organism=Citrus sinensis; type=EST; length=785bp
GTATTCAACATAACATAATACATTCCTTAAGCCAATACTTTTGATATACT
ACAATAAACAATATTAATTTTAGGGACCTTCTAATTTCTTCTAATAGTTG
ATCGACAAGACGTGCATAAGCAAGCCAACTTTTGACCTACCTGTTATTCA
TGGTACTGCAATGAAGTCTTTCTTAGGCTTCAAAACTCCATTACTCATGC
ACAAGCAAATGCTTTGAGACTTCTATCCATAAATCCAGTGTATTAAGAGC
TTTCCCTGATAATTGAATTTCACGTGCCAGGGCTACACCCTCAGCCAAGG
TGTTCACTTTGCAACTGACCAACAGCGCTGCTGCAGCATTTAGGATTAAT
GCATCAGCTATTGCCCCTCTTTCTCCAGACAGTACACGCCTTAAGACCTC
TGCATTATATGCTGGGCCTCCACCTTGCAAGCTTTCTAAAGTGCAGCGCG
GAATGCCGTAGTCCAATGGATCAAATGAGAATCTCTCAATTTTTTCTTGG
GTGACATCAAGGATCAGACCAGGTCCAAGGGGACTCATCTCATCCAAACC
CTCTGAGTGAACAACCAATGCTCTTTTCAGGCCAAATCGTTGCAATGCAT
TGGCCATTTTGAGTACCAAGTTTTCATTGTAAACACCAACCACAGCGAAT
GGCACACATGCAGGATTCAACATAGGACCCAATATATTGAATACAGTTTT
TACTTTGAGCTTTTTCCTCACTGGCCTGACAAACTTCATTGCAGGGTGAT
ACTTTGTCGACATCATGAAACCAATTCCTGCCTCA
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