CF835944

Overview
NameCF835944
Unique NameCF835944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835944_ssr404 microsatellite CF835944_ssr404:404..415. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1142 contig Csv1_Contig1142:677..1515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835944 vs. ExPASy Swiss-Prot
Match: MLO6_ARATH (MLO-like protein 6 OS=Arabidopsis thaliana GN=MLO6 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.709e-14
Identity = 56/138 (40.58%), Postives = 70/138 (50.72%), Query Frame = -3
Query:  465 VAAALKNWHHTAKKQIKQNKGS--VTPLSSRPSTPSYNMSPVHLLR---HYRG----EMDSVQTSPRRSMEQYLDSESPSPPHTFHGEGSSPHHIEQGFYIEYNKGVND-----PGPSQ---QHEIDIVTTKEFSFDK 827
            VA ALK+WHHTAKK IK  + S   TP SSRP+TP++  SP+HLLR   H R     E  +   SPR S     DS  P   H      +S H    G      K V+      PGP Q   QHEI  ++ ++FSF +
Sbjct:  449 VATALKSWHHTAKKNIKHGRTSESTTPFSSRPTTPTHGSSPIHLLRNAPHKRSRSVDESFANSFSPRNS---DFDSWDPESQHETAETSNSNHRSRFGEEESEKKFVSSSVELPPGPGQIRTQHEISTISLRDFSFKR 583          
BLAST of CF835944 vs. ExPASy Swiss-Prot
Match: MLO12_ARATH (MLO-like protein 12 OS=Arabidopsis thaliana GN=MLO12 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.193e-12
Identity = 47/112 (41.96%), Postives = 58/112 (51.79%), Query Frame = -3
Query:  507 VAAALKNWHHTAKKQIKQ-NKGSVTPLSSRPSTPSYNMSPVHLLRHYRGEMDSVQTSPRRSMEQYLDSESPSPPH--TFHGEGSSPHHI--EQGFYIEYNKGVNDPGPSQQH 827
            VA ALK WHHTAKKQ K  + GS TP SSRP+TP++ MSPVHLL +Y       QTS          + SPSPP    + G+G    H    +     Y + + D   S  H
Sbjct:  443 VANALKKWHHTAKKQTKHGHSGSNTPHSSRPTTPTHGMSPVHLLHNYNNRSLDQQTS---------FTASPSPPRFSDYSGQGHGHQHFFDPESQNHSYQREITDSEFSNSH 545          
BLAST of CF835944 vs. ExPASy Swiss-Prot
Match: MLO2_ARATH (MLO-like protein 2 OS=Arabidopsis thaliana GN=MLO2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 40/90 (44.44%), Postives = 51/90 (56.67%), Query Frame = -3
Query:  564 VAAALKNWHHTAKKQIKQNK--GSVTPLSSRPSTPSYNMSPVHLLRHYRGEMDSVQTSPRRSMEQYLDSESPSPPHTFHGEGSSPHHIEQ 827
            VA ALK WHHTAK + K  +  GS TP SSRP+TP++  SP+HLL ++            RS+E Y    SPSP ++ HG     HH  Q
Sbjct:  452 VATALKKWHHTAKNETKHGRHSGSNTPFSSRPTTPTHGSSPIHLLHNFN----------NRSVENY--PSSPSPRYSGHG-----HHEHQ 524          
The following BLAST results are available for this feature:
BLAST of CF835944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MLO6_ARATH3.709e-1440.58MLO-like protein 6 OS=Arabidopsis thaliana GN=MLO6... [more]
MLO12_ARATH1.193e-1241.96MLO-like protein 12 OS=Arabidopsis thaliana GN=MLO... [more]
MLO2_ARATH2.939e-1144.44MLO-like protein 2 OS=Arabidopsis thaliana GN=MLO2... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02C17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835944 ID=CF835944; Name=CF835944; organism=Citrus sinensis; type=EST; length=829bp
TTTTTTTTTTTTTTTTTAAAATTTCCAACTCTACTACTTCACCATTGCAT
TTTGTTTGAATATTGTAAAAAAAGCTGCTGTTGTATACAAAAGTGCAATG
CGCTTCACTTAAACTTTTGTTCAAGGAGTGGAATTACAAGTCTCCATATC
ATATATTAACTAACCATTGGGAGTAATAATTACACTACTATTAATACAAA
TTGTACAAAAAAAAAAAAAAATAATTAAGCACAAATGCAAATAAACAATT
GCAGAGCTCCTTGAGTATCAATCTTCATGATGTACCGCCAAATCATCCCA
AGAACAAAAGAACTTTTCTTTACAAGGTGATGAAACACATTCGAAGACTC
AACTTATGAGTCACCCTTTGGCCTAGGCCCTGAAATTAAGTTGCTCTTAT
GTATAATTAATTAATTTCATGAAACTGAATCCCGCAATATTTTGCTTAAT
TATGTAATTGTCCTCTTATCAAACGAAAATTCTTTCGTTGTTACAATATC
GATCTCATGTTGTTGGCTAGGCCCCGGGTCATTTACACCCTTGTTATATT
CTATGTAGAAACCTTGTTCAATGTGGTGTGGCGATGAGCCTTCGCCGTGG
AACGTGTGCGGCGGAGACGGTGACTCGGAGTCCAAATACTGCTCCATGGA
TCTTCTCGGTGACGTCTGGACGCTGTCCATTTCGCCCCGGTAATGGCGGA
GGAGGTGCACCGGAGACATGTTGTAGGATGGGGTGGATGGCCTGCTGGAC
AAAGGTGTCACAGACCCTTTGTTTTGTTTAATTTGTTTTTTGGCTGTATG
ATGCCAATTCTTTAGTGCTGCTGCTACTC
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