CF835953

Overview
NameCF835953
Unique NameCF835953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9665 contig Csv1_Contig9665:550..1421. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDC2_CHERU (Cell division control protein 2 homolog OS=Chenopodium rubrum GN=CDC2 PE=2 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 3.784e-105
Identity = 179/200 (89.50%), Postives = 192/200 (96.00%), Query Frame = -2
Query:  272 PDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP 871
            PDFA DPR+IK FLYQILRGIAYCHSHRVLHRDLKPQNLLIDR+TNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ+PLFPGDSEIDELFKIFR LGTPNE+TWPGVTSLPDFKS+FPKW SK+L  VV NL+PAGIDLL+KMLC+DPS+RITAR+ALEHEYF+D+ FVP
Sbjct:   95 PDFAKDPRMIKRFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRQTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRTLGTPNEETWPGVTSLPDFKSSFPKWISKDLSAVVPNLDPAGIDLLNKMLCLDPSKRITARNALEHEYFKDIGFVP 294          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDC2A_ANTMA (Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2)

HSP 1 Score: 376.326 bits (965), Expect = 1.217e-103
Identity = 176/200 (88.00%), Postives = 191/200 (95.50%), Query Frame = -2
Query:  272 PDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP 871
            P+F+ DPRL+K FLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRV+GTPNE+TWPGVTSLPDFKSAFPKWP+KEL  VV NL+ +G+DLL KML +DPS+RITAR+AL+HEYF+D+ FVP
Sbjct:   95 PEFSQDPRLVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVMGTPNEETWPGVTSLPDFKSAFPKWPAKELAAVVPNLDASGLDLLDKMLRLDPSKRITARNALQHEYFKDIGFVP 294          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDC21_MEDSA (Cell division control protein 2 homolog 1 (Fragment) OS=Medicago sativa GN=CDC2A PE=2 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.758e-102
Identity = 172/200 (86.00%), Postives = 189/200 (94.50%), Query Frame = -2
Query:  272 PDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP 871
            P+F  DPR +K FLYQ+L GIAYCHSHRVLHRDLKPQNLLIDRRTN+LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEM N+RPL PGDSEIDELFKIFR+LGTPNEDTWPGVTSLPDFKS FP+WPSK+L TVV NLEPAG+DLL+ MLC+DP++RITARSA+EHEYF+D++FVP
Sbjct:   92 PEFIKDPRQVKMFLYQMLCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMANRRPLSPGDSEIDELFKIFRILGTPNEDTWPGVTSLPDFKSTFPRWPSKDLATVVPNLEPAGLDLLNSMLCLDPTKRITARSAVEHEYFKDIKFVP 291          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDC2_VIGAC (Cell division control protein 2 homolog OS=Vigna aconitifolia GN=CDC2 PE=2 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.943e-101
Identity = 171/200 (85.50%), Postives = 188/200 (94.00%), Query Frame = -2
Query:  272 PDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP 871
            P+F  DPR +K FLYQIL GIAYCHSHRVLHRDLKPQNLLIDRRTN+LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVN+RPLFPGDSEIDELFKIFR+LGTPNE+TWPGVT+LPDFKS FPKWP K+L TVV NL+ AG++LLS MLC+DPS+RITAR A+EHEYF+D++FVP
Sbjct:   95 PEFVKDPRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNRRPLFPGDSEIDELFKIFRILGTPNEETWPGVTALPDFKSTFPKWPPKDLATVVPNLDAAGLNLLSSMLCLDPSKRITARIAVEHEYFKDIKFVP 294          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDC22_MEDSA (Cell division control protein 2 homolog 2 OS=Medicago sativa GN=CDC2B PE=2 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 8.164e-100
Identity = 171/200 (85.50%), Postives = 185/200 (92.50%), Query Frame = -2
Query:  272 PDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP 871
            P+FA D R IK FLYQIL GIAYCHSHRVLHRDLKPQNLLIDR +NA+KLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEM+NQRPLFPGDSEIDELFKIFR+ GTPNE+TWPGVTSLPDFKSAFPKWP+K+L T V NLEPAG+DLLS    +DP+RRITAR ALEHEYF+D++FVP
Sbjct:   95 PEFAKDQRQIKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRSSNAVKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMINQRPLFPGDSEIDELFKIFRITGTPNEETWPGVTSLPDFKSAFPKWPAKDLATQVPNLEPAGLDLLSSTCRLDPTRRITARGALEHEYFKDIKFVP 294          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDC2_VIGUN (Cell division control protein 2 homolog OS=Vigna unguiculata GN=CDC2 PE=2 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 1.066e-99
Identity = 168/200 (84.00%), Postives = 187/200 (93.50%), Query Frame = -2
Query:  272 PDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP 871
            P+F  DPR +K FLYQIL GIAYCHSHRVLHRDLKPQNLLIDRRTN+LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGC+FAEMVN+RPLFPGDSEIDELFKIFR+LGTPNE+TWPGVT+LPDFKS FPKWP K+L T+V NL+ AG++LLS ML +DPS+RITAR A+EHEYF+D++FVP
Sbjct:   95 PEFVKDPRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCLFAEMVNRRPLFPGDSEIDELFKIFRILGTPNEETWPGVTALPDFKSTFPKWPPKDLATMVPNLDAAGLNLLSSMLSLDPSKRITARIAVEHEYFKDIKFVP 294          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDKA1_ORYSJ (Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 1.303e-97
Identity = 166/199 (83.42%), Postives = 187/199 (93.97%), Query Frame = -2
Query:  275 PDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFV 871
            P+FA +P LIK++LYQILRG+AYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSR YSTPVD+WSVGCIFAEMVNQ+PLFPGDSEIDELFKIFRVLGTPNE +WPGV+SLPD+KSAFPKW +++L T+V  L+PAG+DLLSKML  +P++RITAR ALEHEYF+D+E V
Sbjct:   95 PEFAKNPTLIKSYLYQILRGVAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRQYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRVLGTPNEQSWPGVSSLPDYKSAFPKWQAQDLATIVPTLDPAGLDLLSKMLRYEPNKRITARQALEHEYFKDLEMV 293          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDC2_MAIZE (Cell division control protein 2 homolog OS=Zea mays GN=CDC2 PE=2 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 4.953e-97
Identity = 165/199 (82.91%), Postives = 186/199 (93.47%), Query Frame = -2
Query:  275 PDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFV 871
            P+FA +P LIK++LYQIL G+AYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLG+R YSTPVDVWSVGCIFAEMVNQ+PLFPGDSEIDELFKIFR+LGTPNE +WPGV+ LPDFK+AFP+W +++L TVV NL+PAG+DLLSKML  +PS+RITAR ALEHEYF+D+E V
Sbjct:   95 PEFAKNPTLIKSYLYQILHGVAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARQYSTPVDVWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEQSWPGVSCLPDFKTAFPRWQAQDLATVVPNLDPAGLDLLSKMLRYEPSKRITARQALEHEYFKDLEVV 293          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDKA1_ARATH (Cyclin-dependent kinase A-1 OS=Arabidopsis thaliana GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.718e-95
Identity = 162/200 (81.00%), Postives = 183/200 (91.50%), Query Frame = -2
Query:  272 PDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP 871
            PDF+ D  +IKT+LYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTN+LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGS HYSTPVD+WSVGCIFAEM++Q+PLFPGDSEID+LFKIFR++GTP EDTW GVTSLPD+KSAFPKW   +L T V NL+P G+DLLSKML MDP++RI AR+ALEHEYF+D+  +P
Sbjct:   95 PDFSKDLHMIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSHHYSTPVDIWSVGCIFAEMISQKPLFPGDSEIDQLFKIFRIMGTPYEDTWRGVTSLPDYKSAFPKWKPTDLETFVPNLDPDGVDLLSKMLLMDPTKRINARAALEHEYFKDLGGMP 294          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDKA2_ORYSJ (Cyclin-dependent kinase A-2 OS=Oryza sativa subsp. japonica GN=CDKA-2 PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 6.055e-95
Identity = 163/197 (82.74%), Postives = 183/197 (92.89%), Query Frame = -2
Query:  281 PDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 871
            PDF N  R++K+FLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTN+LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLG+RHYSTPVD+WSVGCIFAEMVNQ+PLFPGDSEIDELFKIF ++GTPNE+TWPGV SLPD+ S FPKWPS +L TVV  L+ +G+DLLSKML +DPS+RI AR+ALEHEYF+D+E
Sbjct:   95 PDFKNH-RIVKSFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARHYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFSIMGTPNEETWPGVASLPDYISTFPKWPSVDLATVVPTLDSSGLDLLSKMLRLDPSKRINARAALEHEYFKDLE 290          
The following BLAST results are available for this feature:
BLAST of CF835953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC2_CHERU3.784e-10589.50Cell division control protein 2 homolog OS=Chenopo... [more]
CDC2A_ANTMA1.217e-10388.00Cell division control protein 2 homolog A OS=Antir... [more]
CDC21_MEDSA1.758e-10286.00Cell division control protein 2 homolog 1 (Fragmen... [more]
CDC2_VIGAC1.943e-10185.50Cell division control protein 2 homolog OS=Vigna a... [more]
CDC22_MEDSA8.164e-10085.50Cell division control protein 2 homolog 2 OS=Medic... [more]
CDC2_VIGUN1.066e-9984.00Cell division control protein 2 homolog OS=Vigna u... [more]
CDKA1_ORYSJ1.303e-9783.42Cyclin-dependent kinase A-1 OS=Oryza sativa subsp.... [more]
CDC2_MAIZE4.953e-9782.91Cell division control protein 2 homolog OS=Zea may... [more]
CDKA1_ARATH2.718e-9581.00Cyclin-dependent kinase A-1 OS=Arabidopsis thalian... [more]
CDKA2_ORYSJ6.055e-9582.74Cyclin-dependent kinase A-2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835953 ID=CF835953; Name=CF835953; organism=Citrus sinensis; type=EST; length=872bp
TTTTTTTTTTTTTTTTTAATTCAATTTGGTGTATTACATATCAACTATTT
AAAAGAAAAACTGGCACAAACATTTATCCACAAGATCAAGAAAGCCGCGA
ATACACGATTACAAACTAGGCAAATCCAGAGATGACTGTAAAAAGCCATT
CCATGTAGTAAGACTTTTCAGTAAAACTGCAAGTAAAGACAGTCGGCAAA
TTTCGCAAACAATCAAAACCGAAGGCTTCACAATAATGTCAACACTCTAA
TAGCATATACAACAGATATTAGGGTACAAATTCGACGTCCCTGAAGTATT
CATGTTCTAGAGCACTTCTGGCAGTAATTCTTCTGCTTGGATCCATGCAG
AGCATTTTAGAAAGGAGATCAATGCCAGCTGGCTCAAGATTTCGAACAAC
AGTCCCCAACTCCTTAGAAGGCCATTTTGGAAAGGCAGATTTAAAGTCAG
GCAATGAAGTCACTCCAGGCCATGTGTCCTCATTAGGTGTTCCCAAGACT
CTGAAGATCTTGAATAACTCATCAATCTCAGAGTCTCCTGGAAACAATGG
CCGCTGGTTCACCATCTCAGCAAATATACATCCCACCGACCACACATCAA
CTGGAGTAGAGTAATGGCGAGATCCTAGTAATATTTCAGGTGCTCTGTAC
CACAATGTCACCACCTCATGTGTAAATGTCCTAACAGGAATACCAAAAGC
CCTGGCCAGTCCAAAATCTGCTAGCTTTAGTGCATTCGTACGACGATCTA
TTAGCAAATTTTGTGGTTTCAAATCTCGATGAAGAACCCGGTGAGAATGG
CAGTAGGCAATGCCACGTAGAATTTGATAAAGGAATGTTTTTATCAGACG
AGGATCATTAGCAAAATCTGGG
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