CF835956

Overview
NameCF835956
Unique NameCF835956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9665 contig Csv1_Contig9665:49..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDC2_CHERU (Cell division control protein 2 homolog OS=Chenopodium rubrum GN=CDC2 PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 4.815e-98
Identity = 176/183 (96.17%), Postives = 180/183 (98.36%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            MDQYEKVEKIGEGTYGVVYKAR+ VTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK+LYLVFEYLDLDLKKHMDSCPDFA DPR+IK FLYQILRGIAYCHSHRVLHRDLKPQNLLIDR+TNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST
Sbjct:    1 MDQYEKVEKIGEGTYGVVYKARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSCPDFAKDPRMIKRFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRQTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 183          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDC2A_ANTMA (Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2)

HSP 1 Score: 355.14 bits (910), Expect = 2.390e-97
Identity = 174/183 (95.08%), Postives = 180/183 (98.36%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            M+QYEKVEKIGEGTYGVVYKAR+ VTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK+LYLVFEYLDLDLKKHMDSCP+F+ DPRL+K FLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSCPEFSQDPRLVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 183          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKA1_ARATH (Cyclin-dependent kinase A-1 OS=Arabidopsis thaliana GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.227e-93
Identity = 169/183 (92.35%), Postives = 176/183 (96.17%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            MDQYEKVEKIGEGTYGVVYKAR+ VTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQH NIV+LQDVVHSEK+LYLVFEYLDLDLKKHMDS PDF+ D  +IKT+LYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTN+LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGS HYST
Sbjct:    1 MDQYEKVEKIGEGTYGVVYKARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHSNIVKLQDVVHSEKRLYLVFEYLDLDLKKHMDSTPDFSKDLHMIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSHHYST 183          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDC2_VIGAC (Cell division control protein 2 homolog OS=Vigna aconitifolia GN=CDC2 PE=2 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 3.571e-93
Identity = 169/183 (92.35%), Postives = 175/183 (95.63%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            M+QYEKVEKIGEGTYGVVYKAR+ VTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQH NIVRLQDVVHSEK+LYLVFEYLDLDLKKHMDS P+F  DPR +K FLYQIL GIAYCHSHRVLHRDLKPQNLLIDRRTN+LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFVKDPRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 183          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDC2_VIGUN (Cell division control protein 2 homolog OS=Vigna unguiculata GN=CDC2 PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.357e-92
Identity = 168/183 (91.80%), Postives = 175/183 (95.63%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            M+QYEKVEKIGEGTYGVVYKAR+ VT+ETIALKKIRLEQEDEGVPSTAIREISLLKEMQH NIVRLQDVVHSEK+LYLVFEYLDLDLKKHMDS P+F  DPR +K FLYQIL GIAYCHSHRVLHRDLKPQNLLIDRRTN+LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKARDRVTDETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFVKDPRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 183          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKA1_ORYSJ (Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 8.796e-92
Identity = 164/183 (89.62%), Postives = 175/183 (95.63%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            M+QYEK EKIGEGTYGVVY+AR+ VTNETIALKKIRLEQEDEGVPSTAIREISLLKEM HGNIVRL DV+HSEK++YLVFEYLDLDLKK MDSCP+FA +P LIK++LYQILRG+AYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSR YST
Sbjct:    1 MEQYEKEEKIGEGTYGVVYRARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMHHGNIVRLHDVIHSEKRIYLVFEYLDLDLKKFMDSCPEFAKNPTLIKSYLYQILRGVAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRQYST 183          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDC2_MAIZE (Cell division control protein 2 homolog OS=Zea mays GN=CDC2 PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 9.725e-91
Identity = 163/183 (89.07%), Postives = 173/183 (94.54%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            M+QYEKVEKIGEGTYGVVYKA +  TNETIALKKIRLEQEDEGVPSTAIREISLLKEM HGNIVRL DVVHSEK++YLVFEYLDLDLKK MDSCP+FA +P LIK++LYQIL G+AYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLG+R YST
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKALDKATNETIALKKIRLEQEDEGVPSTAIREISLLKEMNHGNIVRLHDVVHSEKRIYLVFEYLDLDLKKFMDSCPEFAKNPTLIKSYLYQILHGVAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARQYST 183          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDC22_MEDSA (Cell division control protein 2 homolog 2 OS=Medicago sativa GN=CDC2B PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.695e-90
Identity = 166/183 (90.71%), Postives = 172/183 (93.99%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            M+QYEKVEKIGEGTYGVVYKAR+  TNETIALKKIRLEQEDEGVPSTAIREISLLKEMQH NIVRLQDVVHSEK+LYLVFEYLDLDLKK MDS P+FA D R IK FLYQIL GIAYCHSHRVLHRDLKPQNLLIDR +NA+KLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKARDRATNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKFMDSSPEFAKDQRQIKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRSSNAVKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 183          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKA2_ORYSJ (Cyclin-dependent kinase A-2 OS=Oryza sativa subsp. japonica GN=CDKA-2 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.404e-89
Identity = 164/183 (89.62%), Postives = 173/183 (94.54%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            M+QYEKVEKIGEGTYGVVYK ++  TNETIALKKIRLEQEDEGVPSTAIREISLLKEMQH NIVRLQDVVH EK +YLVFEYLDLDLKKHMDS PDF N  R++K+FLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTN+LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLG+RHYST
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKGKHRHTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHKEKCIYLVFEYLDLDLKKHMDSSPDFKNH-RIVKSFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARHYST 182          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDC21_MEDSA (Cell division control protein 2 homolog 1 (Fragment) OS=Medicago sativa GN=CDC2A PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.404e-89
Identity = 163/179 (91.06%), Postives = 170/179 (94.97%), Query Frame = 2
Query:  233 EKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            E VEKIGEGTYGVVYKAR+ VTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQH NIVRLQDVVHS+K+LYLVFEYLDLDLKKHMDS P+F  DPR +K FLYQ+L GIAYCHSHRVLHRDLKPQNLLIDRRTN+LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST
Sbjct:    2 ENVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSDKRLYLVFEYLDLDLKKHMDSSPEFIKDPRQVKMFLYQMLCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 180          
The following BLAST results are available for this feature:
BLAST of CF835956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC2_CHERU4.815e-9896.17Cell division control protein 2 homolog OS=Chenopo... [more]
CDC2A_ANTMA2.390e-9795.08Cell division control protein 2 homolog A OS=Antir... [more]
CDKA1_ARATH1.227e-9392.35Cyclin-dependent kinase A-1 OS=Arabidopsis thalian... [more]
CDC2_VIGAC3.571e-9392.35Cell division control protein 2 homolog OS=Vigna a... [more]
CDC2_VIGUN1.357e-9291.80Cell division control protein 2 homolog OS=Vigna u... [more]
CDKA1_ORYSJ8.796e-9289.62Cyclin-dependent kinase A-1 OS=Oryza sativa subsp.... [more]
CDC2_MAIZE9.725e-9189.07Cell division control protein 2 homolog OS=Zea may... [more]
CDC22_MEDSA3.695e-9090.71Cell division control protein 2 homolog 2 OS=Medic... [more]
CDKA2_ORYSJ1.404e-8989.62Cyclin-dependent kinase A-2 OS=Oryza sativa subsp.... [more]
CDC21_MEDSA1.404e-8991.06Cell division control protein 2 homolog 1 (Fragmen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835956 ID=CF835956; Name=CF835956; organism=Citrus sinensis; type=EST; length=769bp
CTCCAATCACCTCACTCTTACTCCGGCGATCTCCCCCGTCGGCTTGGATC
GTCCTCGCGTCTGTCACTGTATTATGCATTTGTATTTTTCTCTTTCGTAA
GCGGTTAATTTTCTCTTCATAACACACTGCCGCCACCTACGCCGTCGATT
CGTGCCGTTCTTGTCGCCGTCCGTCGGTAGCAAGGACGCCTCGTTCGTGT
AGCTGTTACATTAAGACTGAATGGACCAGTATGAAAAGGTTGAGAAGATT
GGTGAAGGAACCTATGGAGTAGTTTACAAGGCCCGTAATTGTGTCACGAA
TGAGACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAGGTG
TGCCTAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAGCAT
GGGAACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACTTTA
TCTGGTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATTCTT
GCCCAGATTTTGCTAATGATCCTCGTCTGATAAAAACATTCCTTTATCAA
ATTCTACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTTCATCGAGA
TTTGAAACCACAAAATTTGCTAATAGATCGTCGTACGAATGCACTAAAGC
TAGCAGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTAGGACATTT
ACACATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACTAGG
ATCTCGCCATTACTCTACT
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