CF835957

Overview
NameCF835957
Unique NameCF835957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5579 contig Csv1_Contig5579:1..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835957 vs. ExPASy Swiss-Prot
Match: CCR4B_ARATH (Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana GN=CCR4-2 PE=2 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 1.014e-74
Identity = 140/178 (78.65%), Postives = 150/178 (84.27%), Query Frame = -1
Query:  260 VANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGV-GLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXLRKDTALPSPEWSSDHIALLAEF 790
            VANTHVNV Q+LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFN++PGSAPH LL MGKV+P+HPDLAVDPL ILRPHTKLTHQLPLVSAYSSF R G+ GLG+E  RRR+D  TNEPLFT+CTRDFIGT DYIFYTA                LRKDTALPSPEWSS+HIALLAEF
Sbjct:  417 VANTHVNVQQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTLPGSAPHTLLVMGKVDPMHPDLAVDPLNILRPHTKLTHQLPLVSAYSSFVRKGIMGLGLEQHRRRIDLNTNEPLFTNCTRDFIGTHDYIFYTADTLMVESLLELLDEDGLRKDTALPSPEWSSNHIALLAEF 594          
BLAST of CF835957 vs. ExPASy Swiss-Prot
Match: CCR4A_ARATH (Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 4.260e-73
Identity = 136/177 (76.84%), Postives = 148/177 (83.62%), Query Frame = -1
Query:  260 VANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXLRKDTALPSPEWSSDHIALLAEF 790
            VANTHVNV  ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFN+VP SAPH LLA+GKV+P+HPDL VDPL ILRPH+KLTHQLPLVSAYS FA++G  +  E QRRR+DP ++EPLFT+CTRDFIGTLDYIFYTA                LRKDTALPSPEWSSDHIALLAEF
Sbjct:  414 VANTHVNVPHELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTVPASAPHTLLAVGKVDPLHPDLMVDPLGILRPHSKLTHQLPLVSAYSQFAKMGGNVITEQQRRRLDPASSEPLFTNCTRDFIGTLDYIFYTADTLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEF 590          
BLAST of CF835957 vs. ExPASy Swiss-Prot
Match: CCR4_ASPNC (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ccr4 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 63/202 (31.19%), Postives = 85/202 (42.08%), Query Frame = -1
Query:  260 VANTHVNVHQELKDVKLWQVHTLLKGLEKIA------------------------ASAD-IPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXLRKDTALPSPEWSSDHIALLAEF 790
            V N H+      KDVKL Q   L++ + K++                        AS D IP+ +CGDFNS PGSA + L+A G++   HPDL       L     +TH   L SAY+S   +                     FT+ T DF   LDYI+YT+                L+K    P+  + SDH+AL AEF
Sbjct:  457 VVNAHLYWDPAFKDVKLIQTAILMEEITKLSEKYAKFPPCTDKTAFRFSEAEVEYASGDQIPLFMCGDFNSAPGSAAYNLVAHGRLTESHPDLEKRLYGNL-SRVGMTHPFKLKSAYNSIGELS--------------------FTNYTPDFKDILDYIWYTSNTLHVSALLGEVDKEYLQKVPGFPNFHFPSDHVALFAEF 637          
BLAST of CF835957 vs. ExPASy Swiss-Prot
Match: CCR4_ASPTN (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ccr4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.441e-12
Identity = 51/147 (34.69%), Postives = 66/147 (44.90%), Query Frame = -1
Query:  260 AASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXLRKDTALPSPEWSSDHIALLAEF 700
            A+   IP+ +CGDFNS PGSA + L+A G++   HPDL       L     +TH   L SAY S   +                     FT+ T DF   LDYI+YT+                L+K    P+  + SDHIAL AEF
Sbjct:  533 ASGDQIPLFMCGDFNSSPGSAAYNLIANGRLTEEHPDLEKRLYGNL-SRVGMTHPFKLKSAYGSIGELS--------------------FTNYTPDFKDILDYIWYTSNTLHVSALLGEVDKDYLQKVPGFPNFHFPSDHIALFAEF 658          
BLAST of CF835957 vs. ExPASy Swiss-Prot
Match: CCR4_COCIM (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Coccidioides immitis GN=CCR4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 49/147 (33.33%), Postives = 70/147 (47.62%), Query Frame = -1
Query:  260 AASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXLRKDTALPSPEWSSDHIALLAEF 700
            ++++ IP+LVCGDFNS PGSA + LLA G++   HPDL    L        ++H   L SAYS                    T  E  FT+ T  F   +DYI+Y++                L++    P+  + SDH+AL+AEF
Sbjct:  540 SSASQIPILVCGDFNSCPGSAVYNLLAHGRMAEEHPDLE-QRLYGNLSRMGMSHPFTLKSAYS--------------------TIGELSFTNYTPGFTDVIDYIWYSSNTLQVTALLGEVDKEYLKRVPGFPNYHFPSDHLALMAEF 665          
BLAST of CF835957 vs. ExPASy Swiss-Prot
Match: CCR4_ASPOR (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus oryzae GN=ccr4 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 49/142 (34.51%), Postives = 65/142 (45.77%), Query Frame = -1
Query:  260 IPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXLRKDTALPSPEWSSDHIALLAEF 685
            IP+ +CGDFNS PGSA + L+A G++   HPDL       L     +TH   L SAY+S   +                     FT+ T DF   LDYI++T+                L+K    P+  + SDHIAL AEF
Sbjct:  607 IPLFMCGDFNSSPGSAAYNLIANGRLTEEHPDLEKRLYGNL-SRVGMTHPFKLKSAYNSIGELS--------------------FTNYTPDFKDILDYIWFTSNTLHVSALLGEVDKDYLQKVPGFPNFHFPSDHIALFAEF 727          
BLAST of CF835957 vs. ExPASy Swiss-Prot
Match: CCR4_NEOFI (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ccr4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 49/147 (33.33%), Postives = 68/147 (46.26%), Query Frame = -1
Query:  260 AASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXLRKDTALPSPEWSSDHIALLAEF 700
            A+   IP+L+CGD NS PGSA + L+A G+++  HPDL       L     +TH   L SAY +   +                     FT+ T DF   LDYI+Y++                L++    P+  + SDHIALLAEF
Sbjct:  606 ASGDQIPLLMCGDLNSSPGSAAYNLIAHGRLDEEHPDLEKRLYGNL-SKVGMTHPFKLKSAYGAIGELP--------------------FTNYTPDFKDILDYIWYSSNSLHVSALLGEVDKDYLQRVPGFPNYHFPSDHIALLAEF 731          
BLAST of CF835957 vs. ExPASy Swiss-Prot
Match: CCR4_ASPFU (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus fumigatus GN=ccr4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 49/147 (33.33%), Postives = 68/147 (46.26%), Query Frame = -1
Query:  260 AASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXLRKDTALPSPEWSSDHIALLAEF 700
            A+   IP+L+CGD NS PGSA + L+A G+++  HPDL       L     +TH   L SAY +   +                     FT+ T DF   LDYI+Y++                L++    P+  + SDHIALLAEF
Sbjct:  552 ASGDQIPLLMCGDLNSSPGSAAYNLIAHGRLDEEHPDLEKRLYGNL-SKVGMTHPFKLKSAYGAIGELP--------------------FTNYTPDFKDILDYIWYSSNSLHVSALLGEVDKDYLQRVPGFPNYHFPSDHIALLAEF 677          
BLAST of CF835957 vs. ExPASy Swiss-Prot
Match: CCR4_ASPCL (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus clavatus GN=ccr4 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 49/142 (34.51%), Postives = 65/142 (45.77%), Query Frame = -1
Query:  260 IPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXLRKDTALPSPEWSSDHIALLAEF 685
            IP+L+CGD NS PGSA + L+A G+++  HPDL       L     +TH   L SAY S   +                     FT+ T DF   LDYI+Y++                L+K    P+  + SDHIAL AEF
Sbjct:  528 IPLLMCGDLNSSPGSAAYNLIAHGRLDEEHPDLEKRLYGNL-SKVGMTHPFKLKSAYGSIGELP--------------------FTNYTPDFKDILDYIWYSSNSLHVSALLGEVDKDYLQKVPGFPNYHFPSDHIALFAEF 648          
BLAST of CF835957 vs. ExPASy Swiss-Prot
Match: CCR4_EMENI (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Emericella nidulans GN=ccr4 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 49/147 (33.33%), Postives = 66/147 (44.90%), Query Frame = -1
Query:  260 AASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXLRKDTALPSPEWSSDHIALLAEF 700
            A+   IP+ +CGDFNS PGSA + L+A G +   HPDL       L     +TH   L SAY +   +                     FT+ T DF   LDYI+Y++                L++    P+  + SDHIALLAEF
Sbjct:  531 ASGDQIPLFMCGDFNSSPGSAAYNLIANGGLIEEHPDLEKRMYGNL-SKVGMTHPFKLKSAYGAIGELS--------------------FTNYTPDFKDILDYIWYSSNTVHVSGLLGEVDKDYLQRVPGFPNYHFPSDHIALLAEF 656          
The following BLAST results are available for this feature:
BLAST of CF835957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CCR4B_ARATH1.014e-7478.65Carbon catabolite repressor protein 4 homolog 2 OS... [more]
CCR4A_ARATH4.260e-7376.84Carbon catabolite repressor protein 4 homolog 1 OS... [more]
CCR4_ASPNC4.481e-1431.19Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_ASPTN1.441e-1234.69Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_COCIM5.477e-1233.33Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_ASPOR7.154e-1234.51Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_NEOFI9.343e-1233.33Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_ASPFU9.343e-1233.33Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_ASPCL1.220e-1134.51Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_EMENI2.718e-1133.33Glucose-repressible alcohol dehydrogenase transcri... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02D01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835957 ID=CF835957; Name=CF835957; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTTTGAGAGAGAAATAAAAAGGGTAGGCAACCTTTTA
AAATTGATCATCTTTTTCTATGAGACAAAAGGTGACTTAATACAGAAGCA
GATCAATGCTGGAATCCCATAAGGAGATAACCAGGAAAGAACACGGAGAG
CATGATCTACCATTCTTACAATGACTTATCTATCAACGGCTTCTCTGGCC
AATTTCCTCGGGCATGTTCGAACCCTGCAGCATCAGCGTCTAGCTCTAGG
CTTGCAGCGGAATTCAGCTAAAAGTGCTATATGATCAGAGGACCACTCTG
GAGAAGGAAGGGCTGTGTCTTTCCTCAAGCTATCCTCATCCAAGAGTTCC
AACAAGGATTCAACGCTTAAAGAATCCGCTGTGTAAAATATGTAATCTAG
GGTACCAATAAAATCTCTTGTGCAATGTGTAAATAACGGTTCATTGGTAG
TAGGGTCCATTCTCCTCCTCTGATGCTCCATGCCGAGACCAACTCCAATT
CTTGCGAAGGATGAGTAAGCACTAACCAATGGAAGTTGATGTGTCAACTT
AGTGTGAGGACGCAAGATCGTAAGAGGATCTACAGCCAAATCTGGATGCA
CTGGCTCTACCTTCCCCATGGCAAGAAGTGCATGAGGAGCACTTCCAGGA
ACAGAATTGAAATCCCCACACACCAGCATTGGAATGTCAGCACTAGCAGC
TATTTTCTCCAATCCTTTTAAGAGCGTATGAACCTGCCACAGCTTAACAT
CCTTCAGCTCTTGGTGGACGTTTACATGTGTATTTGCCAC
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