CF835959

Overview
NameCF835959
Unique NameCF835959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7934 contig Csv1_Contig7934:25..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835959 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.587e-18
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = -2
Query:  432 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 662
            DPNNTT+F+GGL   VT+D L+  F  +G +V+VKIP GK CGFVQ+ +R  AE A++ + G  +    +RLSWGRS
Sbjct:  309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385          
BLAST of CF835959 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = -2
Query:  432 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 662
            D  N+T+FVGGL   V+++ LK +F  +GE+V+VKIP GK CGFVQF NR  AE A++ L G  LG   IRLSWGR+
Sbjct:  299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375          
BLAST of CF835959 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = -2
Query:  357 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGGYYGFAQGYEA 662
            DP NTT+FVGGL P  T+  L+++F  +G +++V+IP GK CGFV+F  R  AE ++  L G  +GG  IRLSWGR  S+     +   G   Y  + G  A
Sbjct:  356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRA 457          
BLAST of CF835959 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 33/77 (42.86%), Postives = 55/77 (71.43%), Query Frame = -2
Query:  432 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 662
            DP NTT+FVGGL  ++++  L+  F  +G ++++KIP GK CGFVQ++ ++ AE+A++ + G  +G   IRL+WG +
Sbjct:  293 DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369          
The following BLAST results are available for this feature:
BLAST of CF835959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NAM8_YEAST9.587e-1851.95Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
YG41_SCHPO1.635e-1755.84Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
NGR1_YEAST1.635e-1743.14Negative growth regulatory protein NGR1 OS=Sacchar... [more]
CSX1_SCHPO1.692e-1442.86RNA-binding post-transcriptional regulator csx1 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02D02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835959 ID=CF835959; Name=CF835959; organism=Citrus sinensis; type=EST; length=717bp
TTTTTTTTTTTTTTTTTAATAACATCAANGTTCGAACATATTTGCAATAT
CTAGTCTGCATGCTACAACCAATCCCATAAATAAATGCTTCAAATACACA
ACATTGCAGATACTAAATAAAAAGAGAAAAAAAAAATCAATAAACTATCT
CCAAGCACTCACATCATCCTCAACAACCAAACAACAAATACCTTCCTAAA
ATTCAATTTGATTATGGCTACCCCAGCTTCAAGACTTGCACCATAAATAC
ATCACTGCTGTGGCTGTTGGTAAGACCCTGGCTGTTGGTAAGTCCCATAT
CCAGGAAAGCCCCCATAGTACATGTTCGGGTCTTGGGTAGGAGGCGCATA
TCCATATGCCTCGTATCCTTGTGCAAAACCATAGTATCCACCACCGTTCC
ATTGGGCCTGATCCGACTGTTTGTTTGAAGGACTACGCCCCCATGACAGT
CTAATGCTTTGTCCTCCTAATTGGGTGCCATTCAAAACTGATAGTGCTTG
CTCCGCACAAGTTCTGTTAGCAAACTGAACAAACCCGCAGCGCTTGCCCG
CTGGTATTTTCACATGAACTAACTCACCATATTGACCAAAAACTGTTTTC
AAAATGTCATCTGTAACACTAGGATCCAAACCCCCAACAAATATTGTTGT
ATTATTTGGATCATTCTCGCCCTGGCTTCCTTGGGTATTTTGATAAGTAG
CTTTCTGATATTGCTGG
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