CF835974

Overview
NameCF835974
Unique NameCF835974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835974 vs. ExPASy Swiss-Prot
Match: TPP2_ARATH (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.207e-55
Identity = 116/214 (54.21%), Postives = 154/214 (71.96%), Query Frame = 2
Query:   62 PNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVP-ESDYVDKGGTT--DKIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVAT 694
            P  +P A+   +T+A EI  +G C SP+++G++SLM  T     P  + M   GISPFK +S+IPFL+GSKW+PC+ P T+  +   VD+GG     K++   S+ ++           W++KLLN+CS+DAKAAFTA+TVS LF+S LAEP+SIPS SM PTLDVGDR++AEKVSYFF++PEVSDIVIF+APPIL E G+S  DVFIKRIVA+
Sbjct:   67 PRARP-ASSMYSTIAREILEEG-CKSPLVLGMISLMNLTGA---PQFSGMTGLGISPFKTSSVIPFLRGSKWMPCSIPATLSTDIAEVDRGGKVCDPKVKLELSDKVSN------GGNGWVNKLLNICSEDAKAAFTAVTVSLLFRSALAEPKSIPSTSMLPTLDVGDRVIAEKVSYFFRKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVAS 269          
BLAST of CF835974 vs. ExPASy Swiss-Prot
Match: TPP1_ARATH (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.207e-55
Identity = 127/234 (54.27%), Postives = 160/234 (68.38%), Query Frame = 2
Query:    2 ECLPLHRVFCHSKKTDLHPPPNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPIL---QEIGFSSGDVFIKRIVAT 694
            E L   R F H  K D    P  +P + Y   ++A E+ G+G+  SP++MGL+S++KST G     +++M V G+S FKA+SIIPFLQGSKW+        P  D VDKGGT         E+ NG S        W++KLL+VCS+DAKAAFTA+TVS LF+S LAEP+SIPS SM PTLD GDR++AEKVSYFF++PEVSDIVIF+APPIL    E G+SS DVFIKRIVA+
Sbjct:   30 ESLVRPRFFSH--KRDFDRSPRNRPASMY--GSIARELIGEGS-QSPLVMGLISILKSTTGH---ESSTMNVLGVSSFKASSIIPFLQGSKWIK-----NPPVIDDVDKGGTVCDDD-DDKESRNGGS-------GWVNKLLSVCSEDAKAAFTAVTVSILFRSALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVAS 242          
BLAST of CF835974 vs. ExPASy Swiss-Prot
Match: PLSP1_ARATH (Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26
Identity = 63/131 (48.09%), Postives = 85/131 (64.89%), Query Frame = 2
Query:  299 TVPESDYVDKGGTTDKIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVA 691
            + P  D  D GG        G ++   V  + +    WL    +  SDDA+  F A+ VS  F+ F+AEPR IPS SM PT DVGDR++AEKVSY+F++P  +DIVIF++PP+LQE+G++  DVFIKRIVA
Sbjct:   75 SAPSLDSGDGGGGD-----GGDDDKGEVEEKNRLFPEWL----DFTSDDAQTVFVAIAVSLAFRYFIAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDADVFIKRIVA 196          
BLAST of CF835974 vs. ExPASy Swiss-Prot
Match: LEP1_SYNY3 (Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803) GN=lepB1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 2
Query:  464 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVA 691
            AL ++ L + F+AEPR IPS SM PTL+ GDR++ EKVSY F  P+V DI++F  P +LQ  G+  G  FIKR++A
Sbjct:   23 ALVLALLLRFFVAEPRYIPSDSMLPTLEQGDRLVVEKVSYHFHPPQVGDIIVFHPPELLQVQGYDLGQAFIKRVIA 98          
The following BLAST results are available for this feature:
BLAST of CF835974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TPP2_ARATH4.207e-5554.21Probable thylakoidal processing peptidase 2, chlor... [more]
TPP1_ARATH4.207e-5554.27Thylakoidal processing peptidase 1, chloroplastic ... [more]
PLSP1_ARATH1.410e-2648.09Chloroplast processing peptidase OS=Arabidopsis th... [more]
LEP1_SYNY32.257e-1652.63Probable signal peptidase I-1 OS=Synechocystis sp.... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02D14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835974 ID=CF835974; Name=CF835974; organism=Citrus sinensis; type=EST; length=696bp
CGAATGCTTGCCTCTACATCGAGTCTTCTGCCATAGCAAAAAAACCGACC
TCCATCCGCCCCCAAATTACCAGCCCAAAGCAAATTACCGATGTAACACA
CTCGCCGCCGAAATATTCGGTGACGGCGCTTGCAACAGTCCGATCCTGAT
GGGATTGGTCTCGTTGATGAAGTCAACGGCTGGTATGCCCGGTCCTTCGG
CAACCTCCATGGGTGTCTTTGGGATTTCACCGTTTAAAGCCGCTTCGATT
ATTCCCTTTCTACAGGGATCGAAGTGGCTTCCCTGTAACGAGCCGGGCAC
CGTTCCGGAGAGTGATTACGTGGATAAAGGAGGGACTACTGATAAAATAC
AGTTTAGTGGGAGTGAAAATCTGAATGGTGTAAGCTTGCAGTTGAAAACA
AGCGGAAGTTGGTTATCGAAGTTGTTGAATGTATGTTCGGATGATGCCAA
GGCCGCCTTTACGGCTTTGACTGTTAGTTTCTTGTTCAAGTCGTTTTTGG
CTGAGCCCAGATCCATTCCATCGGCTTCTATGAACCCTACCCTGGATGTT
GGTGACCGGATTTTGGCAGAGAAGGTTTCATACTTTTTCAAAAGGCCTGA
GGTATCTGATATAGTGATCTTTAGGGCACCTCCGATCTTGCAGGAAATTG
GTTTCAGTTCTGGTGATGTATTCATAAAAAGGATAGTGGCAACGGC
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