CF835977

Overview
NameCF835977
Unique NameCF835977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length223
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9255 contig Csv1_Contig9255:90..312. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835977 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.793e-18
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 3
Query:    9 LSAATPSQLCSSKSGMFCPSRAFLVKPSRTHMVTNNPMGMKIKCHATSIPGDTVPDMGKRQLMNWLLLSAV 221
            LS  TPSQLCS KSG+ CPS A LVKP+RT M      GMKI C ATSIP D VPDM KR+ +N LLL A+
Sbjct:    6 LSPTTPSQLCSGKSGISCPSIALLVKPTRTQMTGRGNKGMKITCQATSIPADRVPDMSKRKTLNLLLLGAL 76          
BLAST of CF835977 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.873e-14
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 3
Query:    9 LSAATPSQLCSSKSGMFCPSRAFLVKPSRTHMVTNNPM--GMKIKCHATSIPGDTVPDMGKRQLMNWLLLSAV 221
            LS+ATPSQLCSSK+GMF PS A L K  R +++ +     GMK+ C ATSIP D VPDM KR+ +N LLL A+
Sbjct:    6 LSSATPSQLCSSKNGMFAPSLA-LAKAGRVNVLISKERIRGMKLTCQATSIPADNVPDMQKRETLNLLLLGAL 77          
BLAST of CF835977 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.290e-12
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 3
Query:   21 TPSQLCSSKSGMFCPSRAFLVKPSRTHMVTNNPMGMKIKCHATSIPGDTVPDMGKRQLMNWLLLSAV 221
            TPSQL ++K+G + PSRA L K +R        +  K+ C ATSIP D VPDMGKRQ MN LLL A+
Sbjct:   11 TPSQLSAAKNGAYSPSRALLGKTARGLYPEKEMVSRKVTCQATSIPADRVPDMGKRQTMNLLLLGAL 77          
BLAST of CF835977 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.663e-12
Identity = 44/78 (56.41%), Postives = 50/78 (64.10%), Query Frame = 3
Query:    3 SYLSAATPSQLCSSKSGMFCPSRAFLVKPSRTHMVTNNPMG----MKIKCHATSIPG-DTVPDMGKRQLMNWLLLSAV 221
            S LS  TPSQLCSSKSG+   S+A LVKP +   +  + MG    MK KC A SIP  D VPDM KR LMN LLL A+
Sbjct:    4 STLSHVTPSQLCSSKSGVSSVSQALLVKPMK---INGHGMGKDKRMKAKCMAASIPADDRVPDMEKRNLMNLLLLGAL 78          
The following BLAST results are available for this feature:
BLAST of CF835977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UCRIA_PEA2.793e-1863.38Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_SPIOL1.873e-1457.53Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG2.290e-1253.73Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_SOLTU6.663e-1256.41Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02D16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835977 ID=CF835977; Name=CF835977; organism=Citrus sinensis; type=EST; length=223bp
CCTCTTATCTCTCCGCAGCAACTCCTTCTCAGCTATGCTCAAGCAAGAGT
GGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAACCATCAAGGACCCA
CATGGTGACAAACAATCCAATGGGAATGAAGATCAAGTGCCACGCTACAA
GTATTCCAGGTGATACAGTGCCTGATATGGGCAAGAGGCAGCTCATGAAT
TGGCTTCTCTTGAGTGCTGTTTC
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