CF835982

Overview
NameCF835982
Unique NameCF835982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5955 contig Csv1_Contig5955:267..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835982 vs. ExPASy Swiss-Prot
Match: VATG_CITLI (V-type proton ATPase subunit G OS=Citrus limon GN=VATG PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.152e-34
Identity = 81/110 (73.64%), Postives = 81/110 (73.64%), Query Frame = -2
Query:  146 MASNRGHGGIXXXXXXXXXXQHIVAAARNAKMARLXXXXXXXXXXXXXXXAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 475
            M SNRG GGI          QHIVAAARNAKMARL               AQVEREFQRKLAES GDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQM LKHVTTVKN
Sbjct:    1 MTSNRGQGGIQQLLAAEQEAQHIVAAARNAKMARLKQAKEEAEREIAEYRAQVEREFQRKLAESVGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMFLKHVTTVKN 110          
BLAST of CF835982 vs. ExPASy Swiss-Prot
Match: VAGT1_ARATH (V-type proton ATPase subunit G1 OS=Arabidopsis thaliana GN=VHA-G1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.873e-24
Identity = 64/110 (58.18%), Postives = 70/110 (63.64%), Query Frame = -2
Query:  146 MASNRGHGGIXXXXXXXXXXQHIVAAARNAKMARLXXXXXXXXXXXXXXXAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 475
            M SNRG G I          QHIV AAR AKMARL               AQ E++FQRKL E+SGDSGANVKRLEQET+ KI  LK  A +I  DVV+MLLKHVTTVKN
Sbjct:    1 MESNRGQGSIQQLLAAEVEAQHIVNAARTAKMARLKQAKEEAEKEIAEYKAQTEQDFQRKLEETSGDSGANVKRLEQETDTKIEQLKNEASRISKDVVEMLLKHVTTVKN 110          
BLAST of CF835982 vs. ExPASy Swiss-Prot
Match: VATG1_TOBAC (V-type proton ATPase subunit G 1 OS=Nicotiana tabacum GN=VATG1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.108e-22
Identity = 61/110 (55.45%), Postives = 69/110 (62.73%), Query Frame = -2
Query:  146 MASNRGHGGIXXXXXXXXXXQHIVAAARNAKMARLXXXXXXXXXXXXXXXAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 475
            MAS+ G  GI          QHIV  AR AK ARL               A +E EFQRKL ++SGDSGANVKRLEQET+ KI HLK  AE++  DVVQMLL+HVTTVKN
Sbjct:    1 MASSSGQNGIQLLLAAEQEAQHIVNNARTAKQARLKQAKEEAEKEIAEFRAYMEAEFQRKLEQTSGDSGANVKRLEQETDAKIEHLKTEAERVSPDVVQMLLRHVTTVKN 110          
BLAST of CF835982 vs. ExPASy Swiss-Prot
Match: VATG2_TOBAC (V-type proton ATPase subunit G 2 OS=Nicotiana tabacum GN=VATG2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.145e-20
Identity = 59/111 (53.15%), Postives = 66/111 (59.46%), Query Frame = -2
Query:  146 MASNRG-HGGIXXXXXXXXXXQHIVAAARNAKMARLXXXXXXXXXXXXXXXAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 475
            M SNRG   GI          QHIV AAR  K AR+               A +E EFQR + ++SGDSGANVKRLEQET  KI HLK  AE I +DVVQMLL+ VTTVKN
Sbjct:    1 MESNRGSQNGIQLLLGAEQEAQHIVNAARTGKQARMKQAKEEAEKEIAEFRAYMEAEFQRNVEQTSGDSGANVKRLEQETFAKIQHLKTEAESISHDVVQMLLRQVTTVKN 111          
BLAST of CF835982 vs. ExPASy Swiss-Prot
Match: VATG2_ARATH (V-type proton ATPase subunit G2 OS=Arabidopsis thaliana GN=VHA-G2 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.642e-16
Identity = 49/88 (55.68%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  146 IVAAARNAKMARLXXXXXXXXXXXXXXXAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 409
            IV AAR AKM RL                  E+ FQRKL  +SGDSGANVKRLEQET+ KI  LK  A +I  DVV MLLK+VTTV N
Sbjct:   19 IVNAARTAKMTRLKQAKEEAETEVAEHKTSTEQGFQRKLEATSGDSGANVKRLEQETDAKIEQLKNEATRISKDVVDMLLKNVTTVNN 106          
BLAST of CF835982 vs. ExPASy Swiss-Prot
Match: VATG3_ARATH (V-type proton ATPase subunit G3 OS=Arabidopsis thaliana GN=VHA-G3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.559e-11
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = -2
Query:  155 MASNRGHGGIXXXXXXXXXXQHIVAAARNAKMARLXXXXXXXXXXXXXXXAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTT 475
            M S RG GGI            IV+AAR AK+AR+               +++E E+Q ++  S  D  A+ KRL+ ET+V+I +LK  + K+  D+V+ML+K+VTT
Sbjct:    1 MDSLRGQGGIQMLLTAEQEAGRIVSAARTAKLARMKQAKDEAEKEMEEYRSRLEEEYQTQV--SGTDQEADAKRLDDETDVRITNLKESSSKVSKDIVKMLIKYVTT 105          
The following BLAST results are available for this feature:
BLAST of CF835982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VATG_CITLI2.152e-3473.64V-type proton ATPase subunit G OS=Citrus limon GN=... [more]
VAGT1_ARATH5.873e-2458.18V-type proton ATPase subunit G1 OS=Arabidopsis tha... [more]
VATG1_TOBAC1.108e-2255.45V-type proton ATPase subunit G 1 OS=Nicotiana taba... [more]
VATG2_TOBAC5.145e-2053.15V-type proton ATPase subunit G 2 OS=Nicotiana taba... [more]
VATG2_ARATH2.642e-1655.68V-type proton ATPase subunit G2 OS=Arabidopsis tha... [more]
VATG3_ARATH2.559e-1137.38V-type proton ATPase subunit G3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02D19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835982 ID=CF835982; Name=CF835982; organism=Citrus sinensis; type=EST; length=512bp
AAGTACAACGAACTCATTTCCAACTTTGCTTTATTACAATCCAAAATAAA
CCAAACGATGAAACAACCAATGCATGGATCCTAATTACAACTCACATGAA
GTCTAGGATTCACAACGAACCAGGAAAAGATAACATCAGAGCTTAATTCT
TCACAGTTGTAACATGCTTGAGGAGCATTTGGACAACATCATATTGAATT
TTCTCAGCCCCAGCCTTCAGATGATGAATTTTTACCTCTGTTTCTTGTTC
AAGCCTCTTCACATTCGCACCTGAATCTCCACTACTCTCTGCAAGTTTCC
TCTGGAACTCACGCTCCACCTGAGCTCGATGTTCAGCAATCTCCCTTTCA
GCCTCTTCTTTGGCTTGCCTCAGTCTAGCCATTTTTGCATTTCTGGCAGC
GGCAACAATGTGTTGAGCTTCTTGTTCAGCAGCCAGCAATTGCTGAATTC
CACCATGACCCCGATTAGATGCCATGCTTTCCTGTTGAGACTTGCTTGCG
GCCAAGATTCCC
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