CF835992

Overview
NameCF835992
Unique NameCF835992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2942 contig Csv1_Contig2942:654..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835992 vs. ExPASy Swiss-Prot
Match: TC132_ARATH (Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.587e-74
Identity = 137/163 (84.05%), Postives = 152/163 (93.25%), Query Frame = -2
Query:  357 VVSSLKHGEGKATSLGFDMQTVGKDLAYTLRSETRFSNFRKNKAMAGLSVTHLGDSLSAGVKVEDKLIVNKRFRVVMTGGAMTSRSDVAYGGSLEAQLRDADYPLGRSLTTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNMIGRANLNNRGAGQVSIRVNSSE 845
            + SS+KHGEGK+TSLGFDMQTVGK+LAYTLRSETRF+NFR+NKA AGLSVTHLGDS+SAG+KVEDK I +K FR+VM+GGAMTSR D AYGG+LEAQLRD DYPLGR LTTLGLSVMDWHGDLAIG NIQSQVPIGRS+N+I RANLNNRGAGQVS+RVNSSE
Sbjct: 1016 MASSVKHGEGKSTSLGFDMQTVGKELAYTLRSETRFNNFRRNKAAAGLSVTHLGDSVSAGLKVEDKFIASKWFRIVMSGGAMTSRGDFAYGGTLEAQLRDKDYPLGRFLTTLGLSVMDWHGDLAIGGNIQSQVPIGRSSNLIARANLNNRGAGQVSVRVNSSE 1178          
BLAST of CF835992 vs. ExPASy Swiss-Prot
Match: TC120_ARATH (Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 3.066e-72
Identity = 135/163 (82.82%), Postives = 150/163 (92.02%), Query Frame = -2
Query:  357 VVSSLKHGEGKATSLGFDMQTVGKDLAYTLRSETRFSNFRKNKAMAGLSVTHLGDSLSAGVKVEDKLIVNKRFRVVMTGGAMTSRSDVAYGGSLEAQLRDADYPLGRSLTTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNMIGRANLNNRGAGQVSIRVNSSE 845
            + SS+KHGEG++TSLGFDMQ  GK+LAYT+RSETRF+ FRKNKA AGLSVT LGDS+SAG+KVEDKLI NKRFR+VM+GGAMTSR DVAYGG+LEAQ RD DYPLGR L+TLGLSVMDWHGDLAIG NIQSQVPIGRS+N+I RANLNNRGAGQVSIRVNSSE
Sbjct:  898 LASSVKHGEGRSTSLGFDMQNAGKELAYTIRSETRFNKFRKNKAAAGLSVTLLGDSVSAGLKVEDKLIANKRFRMVMSGGAMTSRGDVAYGGTLEAQFRDKDYPLGRFLSTLGLSVMDWHGDLAIGGNIQSQVPIGRSSNLIARANLNNRGAGQVSIRVNSSE 1060          
BLAST of CF835992 vs. ExPASy Swiss-Prot
Match: TC159_ARATH (Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.484e-42
Identity = 80/160 (50.00%), Postives = 118/160 (73.75%), Query Frame = -2
Query:  357 SLKHGEGKATSLGFDMQTVGKDLAYTLRSETRFSNFRKNKAMAGLSVTHLGDSLSAGVKVEDKLIVNKRFRVVMTGGAMTSRSDVAYGGSLEAQLRDADYPLGRSLTTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNMIGRANLNNRGAGQVSIRVNSSE 836
            S KHGE  +T  GFD+Q VGK LAY +R ET+F N RKNK   G SVT LG++++ GVK+ED++ + KR  +V + G M S+ D AYG +LE +LR+AD+P+G+  ++ GLS++ W GDLA+G N+QSQV +GR++ +  RA LNN+ +GQ+++R +SS+
Sbjct: 1312 SAKHGENGSTMAGFDIQNVGKQLAYVVRGETKFKNLRKNKTTVGGSVTFLGENIATGVKLEDQIALGKRLVLVGSTGTMRSQGDSAYGANLEVRLREADFPIGQDQSSFGLSLVKWRGDLALGANLQSQVSVGRNSKIALRAGLNNKMSGQITVRTSSSD 1471          
BLAST of CF835992 vs. ExPASy Swiss-Prot
Match: TOC90_ARATH (Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.085e-20
Identity = 49/150 (32.67%), Postives = 81/150 (54.00%), Query Frame = -2
Query:  357 SLGFDMQTVGKDLAYTLRSETRFSNFRKNKAMAGLSVTHLGDSLSAGVKVEDKLIVNKRFRVVMTGGAMTSRSDVAYGGSLEAQLRDADYPLGRSLTTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNMIGRANLNNRGAGQVSIRVNSSE 806
            S+  D+Q+ G+DL Y+ +  T+   F+ N    G+ +T  G     G K+ED L+V KR ++    G M      A GGS EA +R  DYP+      L ++ + +  +L +   +Q+Q    R TN+    N+NNR  G++++++NSSE
Sbjct:  605 SVAVDLQSSGEDLVYSFQGGTKLQTFKHNTTDVGVGLTSFGGKYYVGGKLEDTLLVGKRVKLTANAGQMRGSGQTANGGSFEACIRGRDYPVRNEQIGLTMTALSFKRELVLNYGLQTQFRPARGTNIDVNINMNNRKMGKINVKLNSSE 754          
The following BLAST results are available for this feature:
BLAST of CF835992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TC132_ARATH5.587e-7484.05Translocase of chloroplast 132, chloroplastic OS=A... [more]
TC120_ARATH3.066e-7282.82Translocase of chloroplast 120, chloroplastic OS=A... [more]
TC159_ARATH1.484e-4250.00Translocase of chloroplast 159, chloroplastic OS=A... [more]
TOC90_ARATH2.085e-2032.67Translocase of chloroplast 90, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02E01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835992 ID=CF835992; Name=CF835992; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTTTTTTTTAACTGAAAAGAGGCATGACTTAATAGATAGAAGCA
TTTCTCAGTCAATGGCTTGATGAGAACAAAAATTACCATATGCAAATATC
TAACAAAGAAACTACAATCACTATAACCATAAAAGACAAATAAAAAAGAA
AAAATAAAATAGGAAGTCAGATTCTTACTTTCACTCACTGACCATAAGAA
ATGGCTGTGTCAAACATTTTATCCTATCACCATAAGGCTACAGCAAGACA
TTATACAACCTACTAGCTTTCATCATTGTCCAAGCTGCATTTGTTGTGAA
TAACCCAGCAACTTTTTCAATAGGGGAATGAGGCCAATTAAAGCTAACTG
AAGCTGCTCTGAGCTATTTACACGAATACTGACTTGCCCTGCCCCTCTAT
TATTCAAATTGGCGCGGCCAATCATATTTGTTGACCGTCCAATCGGTACC
TGGGACTGTATATTGCACCCAATGGCCAGATCTCCATGCCAATCCATGAC
AGAGAGCCCAAGAGTTGTCAGCGAACGACCAAGAGGATAGTCTGCATCTC
TTAACTGAGCCTCCAAACTGCCACCATAAGCAACATCACTACGACTGGTC
ATTGCACCACCAGTCATAACTACTCTGAATCTTTTATTCACGATCAATTT
GTCTTCAACTTTCACCCCAGCTGATAACGAATCACCCAAGTGAGTAACTG
AGAGACCAGCCATTGCCTTATTCTTTCTAAAATTACTAAACCTTGTCTCA
CTGCGCAGTGTATAAGCCAAGTCTTTGCCGACAGTCTGCATATCAAAACC
TAATGATGTTGCTTTCCCTTCCCCATGCTTTAGAGAACTGACTACT
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