CF835993

Overview
NameCF835993
Unique NameCF835993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2942 contig Csv1_Contig2942:475..1238. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835993 vs. ExPASy Swiss-Prot
Match: TC132_ARATH (Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 1.808e-113
Identity = 198/242 (81.82%), Postives = 223/242 (92.15%), Query Frame = 1
Query:    4 LDSSNQWLVRPVLETHGWDHDVGYEGINAERLFVVKNKIPISFSGQVTKDKKDANVQMEVVSSLKHGEGKATSLGFDMQTVGKDLAYTLRSETRFSNFRKNKAMAGLSVTHLGDSLSAGVKVEDKLIVNKRFRVVMTGGAMTSRSDVAYGGSLEAQLRDADYPLGRSLTTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNMIGRANLNNRGAGQVSIRVNSSEQLQLALIGLIPPIEKVAGLF 729
            LDSSNQWLVRPVLETHGWDHD+GYEG+NAERLFVVK KIPIS SGQVTKDKKDANVQ+E+ SS+KHGEGK+TSLGFDMQTVGK+LAYTLRSETRF+NFR+NKA AGLSVTHLGDS+SAG+KVEDK I +K FR+VM+GGAMTSR D AYGG+LEAQLRD DYPLGR LTTLGLSVMDWHGDLAIG NIQSQVPIGRS+N+I RANLNNRGAGQVS+RVNSSEQLQLA++ ++P  +K+   +
Sbjct:  957 LDSSNQWLVRPVLETHGWDHDIGYEGVNAERLFVVKEKIPISVSGQVTKDKKDANVQLEMASSVKHGEGKSTSLGFDMQTVGKELAYTLRSETRFNNFRRNKAAAGLSVTHLGDSVSAGLKVEDKFIASKWFRIVMSGGAMTSRGDFAYGGTLEAQLRDKDYPLGRFLTTLGLSVMDWHGDLAIGGNIQSQVPIGRSSNLIARANLNNRGAGQVSVRVNSSEQLQLAMVAIVPLFKKLLSYY 1198          
BLAST of CF835993 vs. ExPASy Swiss-Prot
Match: TC120_ARATH (Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 1.296e-111
Identity = 195/238 (81.93%), Postives = 222/238 (93.28%), Query Frame = 1
Query:    4 LDSSNQWLVRPVLETHGWDHDVGYEGINAERLFVVKNKIPISFSGQVTKDKKDANVQMEVVSSLKHGEGKATSLGFDMQTVGKDLAYTLRSETRFSNFRKNKAMAGLSVTHLGDSLSAGVKVEDKLIVNKRFRVVMTGGAMTSRSDVAYGGSLEAQLRDADYPLGRSLTTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNMIGRANLNNRGAGQVSIRVNSSEQLQLALIGLIPPIEKV 717
            LD+SNQWLVRPVLETHGWDHD+GYEG+NAERLFVVK+KIP+SFSGQVTKDKKDA+VQ+E+ SS+KHGEG++TSLGFDMQ  GK+LAYT+RSETRF+ FRKNKA AGLSVT LGDS+SAG+KVEDKLI NKRFR+VM+GGAMTSR DVAYGG+LEAQ RD DYPLGR L+TLGLSVMDWHGDLAIG NIQSQVPIGRS+N+I RANLNNRGAGQVSIRVNSSEQLQLA++ L+P  +K+
Sbjct:  839 LDTSNQWLVRPVLETHGWDHDIGYEGVNAERLFVVKDKIPVSFSGQVTKDKKDAHVQLELASSVKHGEGRSTSLGFDMQNAGKELAYTIRSETRFNKFRKNKAAAGLSVTLLGDSVSAGLKVEDKLIANKRFRMVMSGGAMTSRGDVAYGGTLEAQFRDKDYPLGRFLSTLGLSVMDWHGDLAIGGNIQSQVPIGRSSNLIARANLNNRGAGQVSIRVNSSEQLQLAVVALVPLFKKL 1076          
BLAST of CF835993 vs. ExPASy Swiss-Prot
Match: TC159_ARATH (Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.829e-66
Identity = 115/233 (49.36%), Postives = 171/233 (73.39%), Query Frame = 1
Query:    4 LDSSNQWLVRPVLETHGWDHDVGYEGINAERLFVVKNKIPISFSGQVTKDKKDANVQMEVVSSLKHGEGKATSLGFDMQTVGKDLAYTLRSETRFSNFRKNKAMAGLSVTHLGDSLSAGVKVEDKLIVNKRFRVVMTGGAMTSRSDVAYGGSLEAQLRDADYPLGRSLTTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNMIGRANLNNRGAGQVSIRVNSSEQLQLALIGLIP 702
            L+ ++Q L RPVL+THGWDHD GY+G+NAE    + ++ P + + QVTKDKK+ N+ ++   S KHGE  +T  GFD+Q VGK LAY +R ET+F N RKNK   G SVT LG++++ GVK+ED++ + KR  +V + G M S+ D AYG +LE +LR+AD+P+G+  ++ GLS++ W GDLA+G N+QSQV +GR++ +  RA LNN+ +GQ+++R +SS+QLQ+AL  ++P
Sbjct: 1250 LEPTSQLLTRPVLDTHGWDHDCGYDGVNAEHSLALASRFPATATVQVTKDKKEFNIHLDSSVSAKHGENGSTMAGFDIQNVGKQLAYVVRGETKFKNLRKNKTTVGGSVTFLGENIATGVKLEDQIALGKRLVLVGSTGTMRSQGDSAYGANLEVRLREADFPIGQDQSSFGLSLVKWRGDLALGANLQSQVSVGRNSKIALRAGLNNKMSGQITVRTSSSDQLQIALTAILP 1482          
BLAST of CF835993 vs. ExPASy Swiss-Prot
Match: TOC90_ARATH (Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.147e-37
Identity = 78/233 (33.48%), Postives = 129/233 (55.36%), Query Frame = 1
Query:    4 LDSSNQWLVRPVLETHGWDHDVGYEGINAERLFVVKNKIPISFSGQVTKDKKDANVQMEVVSSLKHGEGKAT-SLGFDMQTVGKDLAYTLRSETRFSNFRKNKAMAGLSVTHLGDSLSAGVKVEDKLIVNKRFRVVMTGGAMTSRSDVAYGGSLEAQLRDADYPLGRSLTTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNMIGRANLNNRGAGQVSIRVNSSEQLQLALIGLI 699
            + + +QWLVRPV +  GWD DVG++GIN E    +   +  S +GQV++DK+   +Q E  ++      + T S+  D+Q+ G+DL Y+ +  T+   F+ N    G+ +T  G     G K+ED L+V KR ++    G M      A GGS EA +R  DYP+      L ++ + +  +L +   +Q+Q    R TN+    N+NNR  G++++++NSSE  ++ALI  +
Sbjct:  532 VSAGDQWLVRPVYDPQGWDRDVGFDGINIETAAKINRNLFASATGQVSRDKQRFTIQSETNAAYTRNFREQTFSVAVDLQSSGEDLVYSFQGGTKLQTFKHNTTDVGVGLTSFGGKYYVGGKLEDTLLVGKRVKLTANAGQMRGSGQTANGGSFEACIRGRDYPVRNEQIGLTMTALSFKRELVLNYGLQTQFRPARGTNIDVNINMNNRKMGKINVKLNSSEHWEIALISAL 764          
The following BLAST results are available for this feature:
BLAST of CF835993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TC132_ARATH1.808e-11381.82Translocase of chloroplast 132, chloroplastic OS=A... [more]
TC120_ARATH1.296e-11181.93Translocase of chloroplast 120, chloroplastic OS=A... [more]
TC159_ARATH2.829e-6649.36Translocase of chloroplast 159, chloroplastic OS=A... [more]
TOC90_ARATH6.147e-3733.48Translocase of chloroplast 90, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02E01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835993 ID=CF835993; Name=CF835993; organism=Citrus sinensis; type=EST; length=765bp
CGGTTAGATTCCTCCAACCAGTGGCTTGTGAGGCCTGTTTTGGAAACCCA
TGGTTGGGATCATGATGTTGGTTATGAAGGTATAAATGCAGAAAGACTCT
TTGTTGTTAAAAACAAAATTCCCATATCATTTTCTGGTCAGGTTACAAAG
GATAAAAAGGATGCCAATGTTCAAATGGAAGTAGTCAGTTCTCTAAAGCA
TGGGGAAGGGAAAGCAACATCATTAGGTTTTGATATGCAGACTGTCGGCA
AAGACTTGGCTTATACACTGCGCAGTGAGACAAGGTTTAGTAATTTTAGA
AAGAATAAGGCAATGGCTGGTCTCTCAGTTACTCACTTGGGTGATTCGTT
ATCAGCTGGGGTGAAAGTTGAAGACAAATTGATCGTGAATAAAAGATTCA
GAGTAGTTATGACTGGTGGTGCAATGACCAGTCGTAGTGATGTTGCTTAT
GGTGGCAGTTTGGAGGCTCAGTTAAGAGATGCAGACTATCCTCTTGGTCG
TTCGCTGACAACTCTTGGGCTCTCTGTCATGGATTGGCATGGAGATCTGG
CCATTGGGTGCAATATACAGTCCCAGGTACCGATTGGACGGTCAACAAAT
ATGATTGGCCGCGCCAATTTGAATAATAGAGGGGCAGGGCAAGTCAGTAT
TCGTGTAAATAGCTCAGAGCAGCTTCAGTTAGCTTTAATTGGCCTCATTC
CCCCTATTGAAAAAGTTGCTGGGTTATTCACAACAAATGCAGCTTGGACA
ATGATGAAAGCTAGT
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