CF835995

Overview
NameCF835995
Unique NameCF835995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1188 contig Csv1_Contig1188:1..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835995 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.655e-60
Identity = 109/197 (55.33%), Postives = 135/197 (68.53%), Query Frame = 1
Query:   88 GSAQNCGSPV---VCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVD 657
            GSA+ CG      VCPGG CCS+FGWCG T DYC  GCQS C+                 G++G++I+R MF D+L++RN+  CP + FYTYDAFI AAKAFP FG +G+ T RKREIAAF AQT HETTGGW  AP G YAWGYC+ RE G+  + YC P+  +PC    KYYGRGPIQ+++N NY + G+A+GVD
Sbjct:   18 GSAEQCGGQAGGRVCPGGACCSKFGWCGNTADYCGSGCQSQCSST---------------GDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGA-YCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVD 198          
BLAST of CF835995 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 6.655e-60
Identity = 116/201 (57.71%), Postives = 134/201 (66.67%), Query Frame = 1
Query:   88 GSAQNCG---SPVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGE-----CDPDDGTAGDG--GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP--NYPC-RGKYY-GRGPIQLTWNCNYLRCGEAL 648
            GSA+ CG      +CPGG CCS +GWCG T DYC  GCQS C+    G+     CD  D   GDG  G L  II +  F+ LL++RND RCPA  FYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HETTGGWPDAP G YAWGYC+ +E+      YCDP  NY C  GK Y GRGPIQL+WN NY  CG+ L
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCSSYGWCGTTVDYCGIGCQSQCDGGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINC--QPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDL 218          
BLAST of CF835995 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.303e-59
Identity = 116/201 (57.71%), Postives = 139/201 (69.15%), Query Frame = 1
Query:   88 GSAQNCGSPV---VCPGGECCSRFGWCGLTTDYCCE--GCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLTWNCNYLRCGEALGVD 657
            GSA+ CG      +CPGG CCS+FGWCG T DYC +  GCQS C+           G+ GD G L  +I+R+ F+ +L +RND  CPAR FYTYDAFI AAK+FPAF  +G++  RKRE+AAF AQT HETTG  GW  AP G Y WGYC+NRE+  A  DYC  DPNYPC  GK Y+GRGP+QLTWN NY +CG A+GVD
Sbjct:   19 GSAEQCGRQAGGALCPGGLCCSQFGWCGNTDDYCKKENGCQSQCS-----------GSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNPA--DYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVD 205          
BLAST of CF835995 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.796e-58
Identity = 105/196 (53.57%), Postives = 128/196 (65.31%), Query Frame = 1
Query:   85 GGSAQNCGSPV---VCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCR--GKYYGRGPIQLTWNCNYLRCGEALGVD 657
            G   + CG      +CPGG CCS+FGWCG TTDYC  GCQS C            G +    +L  +ISR  F+ +L++RND  CPA+ FYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYCF RE   ++     P +PC    +YYGRGPIQ++WN NY +CG A+GVD
Sbjct:   24 GSYGEQCGRQAGGALCPGGNCCSQFGWCGSTTDYCGPGCQSQCG-----------GPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVD 208          
BLAST of CF835995 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.135e-58
Identity = 116/200 (58.00%), Postives = 136/200 (68.00%), Query Frame = 1
Query:   88 GSAQNCGSPV---VCPGGECCSRFGWCGLTTDYCC-EGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLTWNCNYLRCGEALGVD 657
            GSA+ CG      +CPGG CCS+FGWCG T DYC   GCQS C+           G A   G L  +ISR+ F  +L +RND  CPAR FYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYC+NRE+   SS YC  DPNYPC  GK Y+GRGP+QL+WN NY +CG A+GVD
Sbjct:   20 GSAEQCGRQAGGALCPGGLCCSQFGWCGSTADYCTVPGCQSQCS---------GSGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSS-YCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVD 208          
BLAST of CF835995 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.388e-57
Identity = 104/196 (53.06%), Postives = 128/196 (65.31%), Query Frame = 1
Query:   85 GGSAQNCGSPV---VCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCR--GKYYGRGPIQLTWNCNYLRCGEALGVD 657
            G   + CG      +CPGG CCS+FGWCG TTDYC + CQS C            G +    +L  +ISR  F+ +L++RND  CPA+ FYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYCF RE   ++     P +PC    +YYGRGPIQ++WN NY +CG A+GVD
Sbjct:   23 GSYGEQCGRQAGGALCPGGNCCSQFGWCGSTTDYCGKDCQSQCG-----------GPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVD 207          
BLAST of CF835995 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 221.861 bits (564), Expect = 2.367e-57
Identity = 107/197 (54.31%), Postives = 131/197 (66.50%), Query Frame = 1
Query:   91 SAQNCGSPV---VCPGGECCSRFGWCGLTTDYCCE-GCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVD 657
            SA+ CG      +CP G CCS FGWCG T  YC + GCQS        +C P     G  G+L  IIS   F+D+L++RND  CPAR FYTY+AFI AAK+FP FG +G+   RK+E+AAFF QT HETTGGW  AP G Y+WGYCF +E   A SDYC+P+  +PC    +YYGRGP+QL+WN NY  CG A+GVD
Sbjct:   32 SAEQCGRQAGGALCPNGLCCSEFGWCGNTEPYCKQPGCQS--------QCTPGGTPPGPTGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPA-SDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVD 219          
BLAST of CF835995 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 4.037e-57
Identity = 111/197 (56.35%), Postives = 132/197 (67.01%), Query Frame = 1
Query:   91 SAQNCGSPVV---CPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLTWNCNYLRCGEALGVD 657
            SA+ CGS      CP G CCS+FGWCG T DYC  G CQS C     G   P   T   GG+LG IIS  MF+ +L++RND  C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+ RE G +  DYC P+  +PC    KY+GRGPIQ++ N NY  CG A+GVD
Sbjct:   22 SAEQCGSQAGGARCPSGLCCSKFGWCGNTNDYCGPGNCQSQCP----GGPTPTPPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQG-SPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVD 213          
BLAST of CF835995 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 5.273e-57
Identity = 102/194 (52.58%), Postives = 129/194 (66.49%), Query Frame = 1
Query:   91 SAQNCGSPV---VCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRG--KYYGRGPIQLTWNCNYLRCGEALGVD 657
            SA+ CG+     +CPGG CCS+FGWCG T++YC +GCQS C+           G++G GG L  +IS   F ++L++RND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYCF RE   ++       +PC    +YYGRGPIQ++WN NY +CG A+GVD
Sbjct:   19 SAEQCGTQAGGALCPGGLCCSKFGWCGSTSEYCGDGCQSQCS-----------GSSG-GGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVD 200          
BLAST of CF835995 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 3.418e-56
Identity = 113/197 (57.36%), Postives = 133/197 (67.51%), Query Frame = 1
Query:   97 QNCGSPV---VCPGGECCSRFGWCGLTTDYCC-EGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLTWNCNYLRCGEALGVD 657
            + CG      +CPGG CCS+FGWCG T DYC   GCQS C+           G A   G L  +ISR+ F  +L +RND  CPAR FYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYC+NRE+   SS YC  DPNYPC  GK Y+GRGP+QL+WN NY +CG A+GVD
Sbjct:    1 EQCGRQAGGALCPGGLCCSQFGWCGSTADYCTVPGCQSQCS---------GSGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSS-YCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVD 186          
The following BLAST results are available for this feature:
BLAST of CF835995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_VITVI6.655e-6055.33Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI6_POPTR6.655e-6057.71Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI1_THECC3.303e-5957.71Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_PHAVU2.796e-5853.57Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI1_GOSHI8.135e-5858.00Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI5_PHAVU1.388e-5753.06Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHIB_ARATH2.367e-5754.31Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI1_TOBAC4.037e-5756.35Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI2_PEA5.273e-5752.58Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_GOSHI3.418e-5657.36Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835995 ID=CF835995; Name=CF835995; organism=Citrus sinensis; type=EST; length=658bp
CCTTTTTGATATCATAACTGTTGCTTTCAAATGAGGCTTACTTGGTCCTT
ACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGGAGGCTCAGCACAGA
ACTGTGGAAGCCCCGTTGTGTGCCCAGGAGGGGAGTGTTGTAGTCGATTT
GGTTGGTGTGGCCTAACAACAGACTACTGTTGTGAAGGCTGCCAAAGTAA
CTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGACGACGGGACGGCTG
GCGATGGCGGTGAACTGGGCAAGATCATCTCAAGGAAGATGTTTGAAGAC
TTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCAGATGCTTCTACAC
TTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAATT
CTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAA
ACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGCGAATA
TGCTTGGGGATATTGCTTTAATAGGGAAGTTGGTGCTGCGTCGTCCGACT
ACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCA
ATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGGG
GGTGGACT
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