CF835996
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 4.284e-43 Identity = 89/159 (55.97%), Postives = 112/159 (70.44%), Query Frame = 2 Query: 410 QLQGQ--------ISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRES 862 QLQGQ ++ + GA+ + TSLYVGDLDFNVTDSQLFD +G VV+VRVCRDL TRRSLGY YVN+ +P DAARA+ LN+ PL K IR+ H DPS+R +G+ I I+NLD+S+ HKAL DTFSSFG+I+SC++A D S +S Sbjct: 5 QLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQS 163
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 5.608e-35 Identity = 71/139 (51.08%), Postives = 102/139 (73.38%), Query Frame = 2 Query: 446 AAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRES 862 AA A G ++ SLYVG+LD +VT++ LF++ +++G V S+RVCRD TRRSLGYAYVNY + AD RAL+ LN++ + +S RI DP++R+TG I I+NLD+S+ +KAL DTF++FG ILSC++ TD + +S Sbjct: 35 AAAAPGGNTVSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKS 173
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 145.976 bits (367), Expect = 2.783e-34 Identity = 71/122 (58.20%), Postives = 92/122 (75.41%), Query Frame = 2 Query: 482 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847 SLYVGDL +V +S LFD S G V+S+RVCRD+ TRRSLGYAYVN+ PADA RALD +NF + NK IRI DPS+R +G + I+NLD+++ +KA+ DTFS+FG+ILSC++ATD Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD 124
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 4.747e-34 Identity = 71/144 (49.31%), Postives = 102/144 (70.83%), Query Frame = 2 Query: 416 QGQISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847 +G+ + E G+ ++ SLYVG+LD +VT++ LF++ + +G V SVRVCRD TRRSLGYAYVN+ + AD RAL+ LN++P+ + RI DP++R+TG+ I I+NLD ++ +KAL DTFS+FG ILSC+IATD Sbjct: 25 EGEAKTESSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATD 168
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 4.747e-34 Identity = 70/134 (52.24%), Postives = 98/134 (73.13%), Query Frame = 2 Query: 446 AAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847 +A S N+ + SLYVG+LD +VT++ L++L S +GQV S+RVCRD TRRSLGYAYVNY + AD RAL+ LN+T + K RI DP++R+TG + I+NLD ++ +KAL DTF++FG+ILSC++A D Sbjct: 41 SATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD 174
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 6.200e-34 Identity = 70/135 (51.85%), Postives = 98/135 (72.59%), Query Frame = 2 Query: 443 EAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847 E A S ++ + SLYVG+LD +VT++ L++L S +GQV S+RVCRD TRRSLGYAYVNY + AD RAL+ LN+T + K RI DP++R+TG + I+NLD ++ +KAL DTF++FG+ILSC++A D Sbjct: 36 ETAAPSTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD 170
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 144.436 bits (363), Expect = 8.098e-34 Identity = 70/133 (52.63%), Postives = 97/133 (72.93%), Query Frame = 2 Query: 449 AGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847 A A+ ++ + SLYVG+LD +VT++ L++L S +GQV S+RVCRD TRRSLGYAYVNY D A RALD LN+T + K RI DP++R+TG + I+NLD ++ +KAL DTF++FG+ILSC++A D Sbjct: 32 APATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD 164
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 1.058e-33 Identity = 68/142 (47.89%), Postives = 99/142 (69.72%), Query Frame = 2 Query: 422 QISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847 +++ + N+ + SLYVG+LD +VT++ L++L S +GQV S+RVCRD TRRSLGYAYVNY + AD RAL+ LN+T + K RI DP++R+TG + I+NLD ++ +KAL DTF++FG+ILSC++A D Sbjct: 35 EVTAVENSTPAPAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD 176
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.381e-33 Identity = 70/130 (53.85%), Postives = 94/130 (72.31%), Query Frame = 2 Query: 473 LATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRES 862 +++SLYVGDL V++ LF++ + VG V ++RVCRD +TRRSL YAYVNY + ADA RALD LN TP+ K+ RI DPS+R++G + I+NLDK + HKAL DTFS+FG+ILSC++ TD S Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSS 137
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.381e-33 Identity = 68/130 (52.31%), Postives = 96/130 (73.85%), Query Frame = 2 Query: 458 SGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847 + N+ + SLYVG+LD +VT++ L++L S +GQV S+RVCRD TRRSLGYAYVNY + AD RAL+ LN+T + K RI DP++R+TG + I+NLD ++ +KAL DTF++FG+ILSC++A D Sbjct: 44 NNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD 173 The following BLAST results are available for this feature:
BLAST of CF835996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835996 ID=CF835996; Name=CF835996; organism=Citrus sinensis; type=EST; length=892bpback to top |