CF835996

Overview
NameCF835996
Unique NameCF835996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835996_ssr299 microsatellite CF835996_ssr299:299..310. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1143 contig Csv1_Contig1143:2..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.284e-43
Identity = 89/159 (55.97%), Postives = 112/159 (70.44%), Query Frame = 2
Query:  410 QLQGQ--------ISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRES 862
            QLQGQ        ++     + GA+  +   TSLYVGDLDFNVTDSQLFD    +G VV+VRVCRDL TRRSLGY YVN+ +P DAARA+  LN+ PL  K IR+   H DPS+R +G+  I I+NLD+S+ HKAL DTFSSFG+I+SC++A D S +S
Sbjct:    5 QLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQS 163          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.608e-35
Identity = 71/139 (51.08%), Postives = 102/139 (73.38%), Query Frame = 2
Query:  446 AAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRES 862
            AA A G   ++ SLYVG+LD +VT++ LF++ +++G V S+RVCRD  TRRSLGYAYVNY + AD  RAL+ LN++ +  +S RI     DP++R+TG   I I+NLD+S+ +KAL DTF++FG ILSC++ TD + +S
Sbjct:   35 AAAAPGGNTVSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKS 173          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 2.783e-34
Identity = 71/122 (58.20%), Postives = 92/122 (75.41%), Query Frame = 2
Query:  482 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847
            SLYVGDL  +V +S LFD  S  G V+S+RVCRD+ TRRSLGYAYVN+  PADA RALD +NF  + NK IRI     DPS+R +G   + I+NLD+++ +KA+ DTFS+FG+ILSC++ATD
Sbjct:    3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD 124          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.747e-34
Identity = 71/144 (49.31%), Postives = 102/144 (70.83%), Query Frame = 2
Query:  416 QGQISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847
            +G+    + E  G+  ++    SLYVG+LD +VT++ LF++ + +G V SVRVCRD  TRRSLGYAYVN+ + AD  RAL+ LN++P+  +  RI     DP++R+TG+  I I+NLD ++ +KAL DTFS+FG ILSC+IATD
Sbjct:   25 EGEAKTESSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATD 168          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.747e-34
Identity = 70/134 (52.24%), Postives = 98/134 (73.13%), Query Frame = 2
Query:  446 AAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847
            +A  S N+  + SLYVG+LD +VT++ L++L S +GQV S+RVCRD  TRRSLGYAYVNY + AD  RAL+ LN+T +  K  RI     DP++R+TG   + I+NLD ++ +KAL DTF++FG+ILSC++A D
Sbjct:   41 SATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD 174          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.200e-34
Identity = 70/135 (51.85%), Postives = 98/135 (72.59%), Query Frame = 2
Query:  443 EAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847
            E A  S ++  + SLYVG+LD +VT++ L++L S +GQV S+RVCRD  TRRSLGYAYVNY + AD  RAL+ LN+T +  K  RI     DP++R+TG   + I+NLD ++ +KAL DTF++FG+ILSC++A D
Sbjct:   36 ETAAPSTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD 170          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 8.098e-34
Identity = 70/133 (52.63%), Postives = 97/133 (72.93%), Query Frame = 2
Query:  449 AGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847
            A A+ ++  + SLYVG+LD +VT++ L++L S +GQV S+RVCRD  TRRSLGYAYVNY D A   RALD LN+T +  K  RI     DP++R+TG   + I+NLD ++ +KAL DTF++FG+ILSC++A D
Sbjct:   32 APATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD 164          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.058e-33
Identity = 68/142 (47.89%), Postives = 99/142 (69.72%), Query Frame = 2
Query:  422 QISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847
            +++         + N+  + SLYVG+LD +VT++ L++L S +GQV S+RVCRD  TRRSLGYAYVNY + AD  RAL+ LN+T +  K  RI     DP++R+TG   + I+NLD ++ +KAL DTF++FG+ILSC++A D
Sbjct:   35 EVTAVENSTPAPAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD 176          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.381e-33
Identity = 70/130 (53.85%), Postives = 94/130 (72.31%), Query Frame = 2
Query:  473 LATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRES 862
            +++SLYVGDL   V++  LF++ + VG V ++RVCRD +TRRSL YAYVNY + ADA RALD LN TP+  K+ RI     DPS+R++G   + I+NLDK + HKAL DTFS+FG+ILSC++ TD    S
Sbjct:    8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSS 137          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.381e-33
Identity = 68/130 (52.31%), Postives = 96/130 (73.85%), Query Frame = 2
Query:  458 SGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847
            + N+  + SLYVG+LD +VT++ L++L S +GQV S+RVCRD  TRRSLGYAYVNY + AD  RAL+ LN+T +  K  RI     DP++R+TG   + I+NLD ++ +KAL DTF++FG+ILSC++A D
Sbjct:   44 NNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD 173          
The following BLAST results are available for this feature:
BLAST of CF835996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PABP2_ARATH4.284e-4355.97Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP_CRYNE5.608e-3551.08Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DROME2.783e-3458.20Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP_YARLI4.747e-3449.31Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEOFI4.747e-3452.24Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPTN6.200e-3451.85Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_EMENI8.098e-3452.63Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPNC1.058e-3347.89Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1A_DICDI1.381e-3353.85Polyadenylate-binding protein 1-A OS=Dictyostelium... [more]
PABP_ASPCL1.381e-3352.31Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835996 ID=CF835996; Name=CF835996; organism=Citrus sinensis; type=EST; length=892bp
TTTTTTTATAGAAAATACAGGGGTGCCAATAGCGCCACTCTTTCTATTTA
TATCATCAATTGATAACCAGTAATGGGCTTAGATCCAATATAAATAAATA
TTTGAATTGTTCTGCCCAAAACCCAAATACTTTGGCTGAACCGTAAAATA
ATGAAACCATGGGGTGCCATGGGATAGAAACCAAAAACCTTAAATCACAT
ATTCTGTTGGACTTAAATGCAACAAAAGTCCAAACTTTGACATAAAAAAT
AAATTACTAAGACCATAGGGTGACTAATGAAAAGATCCAAAAGAAACCCT
CTCTCTCTCTTTGCTTTTCGCTGCCAATTCCAGAGGCAATTCGTGGCTGC
TGTTTTTTCTGCTTCTTGCGGCTTCAACCTGTTCTTTGTTTTCTTGAGCT
CTTTGATATCAACTTCAAGGGCAAATCTCGGGGCGAAACGGAGAGGCGGC
GGGTGCGTCAGGGAACCGGTTACTAGCGACGTCCCTTTATGTTGGCGATC
TCGATTTCAACGTAACCGATTCGCAGCTTTTTGATCTGTTGAGCCTGGTT
GGTCAAGTCGTGTCGGTTAGGGTTTGTCGAGACCTGAGCACCAGGCGCTC
TCTCGGCTACGCCTACGTTAACTACGGCGACCCTGCAGATGCGGCGAGGG
CACTGGATGTTCTGAACTTCACTCCACTTAATAATAAGTCCATCAGAATC
ACGTAATGTCATGGGGATCCTAGTATCCGAGAAACCGGTTCTGCGACCAT
ACTTATCGAGAATCTGGACAAGTCTGTTCATCACAAAGCATTACGCGATA
CATTTTCTTCATTTGGGAGCATTCTTTCTTGTGAGATAGCTACTGATGGT
TCTCGCGAGTCCCCAGCACTACTAGAAAAATGATCTTTTGCC
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