CF835998

Overview
NameCF835998
Unique NameCF835998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF835998 vs. ExPASy Swiss-Prot
Match: ICR4_ARATH (Interactor of constitutive active ROPs 4 OS=Arabidopsis thaliana GN=ICR4 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.529e-36
Identity = 82/194 (42.27%), Postives = 117/194 (60.31%), Query Frame = -3 
Query:  211 EPEKVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQXXXXXXXXXXXXXXXXXXXXXLRVQTDQWKKXXXXXASILAGDVEMNGRIPERCGSMDKHFGGVFEPLTGSYAGFVGSPGMADDLDDGFASGKRKGSGIKMFGDLWKKKGHK 792
            E EK    EL   +D+IN+L+ +L + EK+   +++EN++LK QL +  + +S A+ +++E+   ++++GEE++ S     +                     L+VQT+QW+K     A++L+G VEMNGR  E+CGSM+KHF G           FVGSPGMADD DDG  SGKRK SG KMFGDLWKKKG K
Sbjct:  145 ESEKTKNDELASKEDQINVLKARLYDLEKERVSLSEENETLKDQLKKTDTEMSCAKAKEDEIASKVSQIGEELEESNETTAKLKKKLESVEEAKETLEAEMKKLKVQTEQWRKAADAAAAVLSGGVEMNGRFSEQCGSMEKHFAG----------RFVGSPGMADDSDDG--SGKRKSSGKKMFGDLWKKKGQK 326
[Close]
BLAST of CF835998 vs. ExPASy Swiss-Prot
Match: ICR1_ARATH (Interactor of constitutive active ROPs 1 OS=Arabidopsis thaliana GN=ICR1 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.625e-35
Identity = 79/187 (42.25%), Postives = 119/187 (63.64%), Query Frame = -3 
Query:  211 ELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQXXXXXXXXXXXXXXXXXXXXXLRVQTDQWKKXXXXXASILAGDVEMNGRIPERCGSMDKHF-GGVFEPLTGSYAGFVGSPGMADDLDDGFASGKRKGSGIKMFGDLWKKKGHK 768
            +L   +DEI +L+ +L + EK+ E + +EN+SLK QL++++S IS  +  ++EM   ++++GEE++ S+A+                        LRVQT+QW+K     A++L+G+ EMNGR  +R GS +K++ GG F+P     AGF+  PGMADD DDG  SGKRK SG+KMFG+LW+KKG K
Sbjct:  164 KLVAKEDEIKMLKARLYDMEKEHESLGKENESLKNQLSDSASEISNVKANEDEMVSKVSRIGEELEESRAKTAHLKEKLESMEEAKDALEAEMKKLRVQTEQWRKAADAAAAVLSGEFEMNGR--DRSGSTEKYYAGGFFDPS----AGFMDPPGMADDYDDGLGSGKRKSSGMKMFGELWRKKGQK 344
The following BLAST results are available for this feature:
BLAST of CF835998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ICR4_ARATH9.529e-3642.27Interactor of constitutive active ROPs 4 OS=Arabid... [more]
ICR1_ARATH1.625e-3542.25Interactor of constitutive active ROPs 1 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02E04_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835998 ID=CF835998; Name=CF835998; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTTTTTTTTTTGAAACAAATATTTGCCTTTCAAGCACCCCATCAA
GACAATGGCCTGGGGCTCCTGGATCCTAAGCCATCAACAAAATACTACAT
ATTGGAGTCACCTTAATGTTACAACGCCAACAGAACGTGAAATAGTAAGC
AACCATTTCTCCGAACATTCTTCTTGGTGATTTTAACATCACAAAAGGGA
GCGAGTCTTATTTGTGACCTTTCTTCTTCCACAAGTCTCCAAACATCTTA
ATTCCAGAGCCCTTGCGCTTTCCACTAGCAAAACCGTCATCTAGATCATC
AGCCATCCCAGGTGATCCCACAAAACCGGCATAGCTACCAGTCAACGGCT
CAAACACACCACCAAAGTGCTTGTCCATTGATCCACACCTCTCAGGAATC
CTCCCATTCATCTCTACATCTCCAGCAAGAATTGATGCTGCGGCATCAGC
TGCTTTTTTCCACTGGTCTGTCTGTACTCGAAGCTTCTTCATCTCCATTT
CCAGTGCTTTTTTTGCTCCTTCTGCAGCTTCCAACTTCTCCTTCAACTGA
ATTGCTTCAGCTTTACTTGCCTGCACCTCTTCTCCCAGTTTGTTCAGGCT
CTGAGTCATTTCCTCTTTCTCTTTTTGAGCAGTTGAAATATTCGACGAAG
CTTCATTCAACTGCTTTTTCAGGCTTTTATTTTCTTGAGCCATCCCCTCT
AGTTGCTTCTCCTTCTCATCTAGCTTGTTTTGTAGCAAATTTATCTCATC
CTTTGTCAAGGTTAACTCATGGATTGATACTTTCTCTGGCTCAGGTTCTG
CTG
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