CF836004

Overview
NameCF836004
Unique NameCF836004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:119..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 2.322e-56
Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            SMYNAEKRGKRQVMI PSSKVIIKFL+ MQKHGYIGE EYVDDHR+GKIVVELNGR+NKCGVISPRFDVGVKEI GWT RLLPSRQ+GYIVLTT AGIM HEEARRKNVGGK+ GFFY
Sbjct:   13 SMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 6.755e-56
Identity = 104/118 (88.14%), Postives = 110/118 (93.22%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            SM+NAEKRGKRQVMI PSSKVIIKFL+ MQKHGYIGE EYVDDHR+GKIVVELNGR+NKCGVISPRFDVGVKEI GWT RLLPSRQ+GYIVLTT AGIM HEEARRKNVGGK+ GFFY
Sbjct:   13 SMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 6.755e-56
Identity = 104/118 (88.14%), Postives = 110/118 (93.22%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            SMYNAEKRGKRQVMI PSSKVIIKFL+ MQKHGYIGE EYVDDHR+GKIVVELNGR+NKCGVISPRFDVGVKEI GWT RLLPSRQ+G+IVLTT AGIM HEEARRKNVGGK+ GFFY
Sbjct:   13 SMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 7.468e-55
Identity = 102/118 (86.44%), Postives = 109/118 (92.37%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            SM+NAEKRGKRQVMI PSSKV+IKFL+ MQKHGYIGE EYVDDHR+GKIVVELNGR+NKCGVISPRFDVGVKEI  WT RLLPSRQ+GYIVLTT AGIM HEEARRKNVGGK+ GFFY
Sbjct:   13 SMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 7.729e-52
Identity = 97/118 (82.20%), Postives = 106/118 (89.83%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            SM NAEK+GKRQVMI PSSKVIIKFL  MQKHGYI E EYVDDHR+GKIVVELNGR+N CGVISPR+D+GVKEI GWT +LLPSRQ+GYIVLTT AGIM HEEAR+KNVGGK+ GFFY
Sbjct:   13 SMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS22A_YEAST (40S ribosomal protein S22-A OS=Saccharomyces cerevisiae GN=RPS22A PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.081e-45
Identity = 85/115 (73.91%), Postives = 99/115 (86.09%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAEK GKRQV+I PSSKVIIKFL  MQKHGYIGE EY+DDHR+GKIVV+LNGR+NKCGVISPRF+V + +I  WT  LLP+RQ+GY++LTT AGIM HEEARRK+V GK+ GF Y
Sbjct:   16 NAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS22_CANAL (40S ribosomal protein S22 OS=Candida albicans GN=RPS22A PE=3 SV=3)

HSP 1 Score: 181.415 bits (459), Expect = 1.844e-45
Identity = 84/115 (73.04%), Postives = 98/115 (85.22%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAEK GKRQV+I PSSKVIIKFL  MQKHGYIGE EY+DDHR+GKIVV+LNGR+NKCGVI PRF+V + +I  WT  LLP+RQ+GY++LTT AGIM HEEARRK+V GK+ GF Y
Sbjct:   16 NAEKTGKRQVLIRPSSKVIIKFLTVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVIQPRFNVKINDIERWTDNLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS22B_YEAST (40S ribosomal protein S22-B OS=Saccharomyces cerevisiae GN=RPS22B PE=1 SV=3)

HSP 1 Score: 181.415 bits (459), Expect = 1.844e-45
Identity = 84/115 (73.04%), Postives = 99/115 (86.09%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAEK GKRQV++ PSSKVIIKFL  MQKHGYIGE EY+DDHR+GKIVV+LNGR+NKCGVISPRF+V + +I  WT  LLP+RQ+GY++LTT AGIM HEEARRK+V GK+ GF Y
Sbjct:   16 NAEKTGKRQVLLRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS22_CANGA (40S ribosomal protein S22 OS=Candida glabrata GN=RPS22 PE=3 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 2.408e-45
Identity = 84/115 (73.04%), Postives = 99/115 (86.09%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAEK GKRQV+I PSSKVIIKFL  MQ+HGYIGE EY+DDHR+GKIVV+LNGR+NKCGVISPRF+V + +I  WT  LLP+RQ+GY++LTT AGIM HEEARRK+V GK+ GF Y
Sbjct:   16 NAEKTGKRQVLIRPSSKVIIKFLQVMQRHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS22_KLUMA (40S ribosomal protein S22 OS=Kluyveromyces marxianus GN=RPS22 PE=3 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 3.145e-45
Identity = 83/115 (72.17%), Postives = 98/115 (85.22%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAEK GKRQV+I PSSKVIIKFL  MQKHGYIGE EY+DDHR+GKIVV+LNGR+NKCGVISPRF+V + ++  WT  LLP+RQ+GY++LTT AGIM HEEA RK+V GK+ GF Y
Sbjct:   16 NAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKISDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVSGKILGFVY 130          
The following BLAST results are available for this feature:
BLAST of CF836004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
R15A1_ARATH2.322e-5688.9840S ribosomal protein S15a-1 OS=Arabidopsis thalia... [more]
RS15A_BRANA6.755e-5688.1440S ribosomal protein S15a OS=Brassica napus GN=RP... [more]
R15A4_ARATH6.755e-5688.1440S ribosomal protein S15a-4 OS=Arabidopsis thalia... [more]
RS15A_DAUCA7.468e-5586.4440S ribosomal protein S15a OS=Daucus carota GN=RPS... [more]
R15A3_ARATH7.729e-5282.2040S ribosomal protein S15a-3 OS=Arabidopsis thalia... [more]
RS22A_YEAST1.081e-4573.9140S ribosomal protein S22-A OS=Saccharomyces cerev... [more]
RS22_CANAL1.844e-4573.0440S ribosomal protein S22 OS=Candida albicans GN=R... [more]
RS22B_YEAST1.844e-4573.0440S ribosomal protein S22-B OS=Saccharomyces cerev... [more]
RS22_CANGA2.408e-4573.0440S ribosomal protein S22 OS=Candida glabrata GN=R... [more]
RS22_KLUMA3.145e-4572.1740S ribosomal protein S22 OS=Kluyveromyces marxian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836004 ID=CF836004; Name=CF836004; organism=Citrus sinensis; type=EST; length=488bp
AGGCACCAATCCGAGTTTAGAAATGCATAGTTAAATCAAGTAAAACAAAG
AGAAGCTATTCCATTTGTGAACAAGTTCTTCCAAAGTACACAAACAAAAC
TCAAGTCCCATTCTCAATATGAACTTTGCCTAATAGAAAAAACCAAACAG
TTTACCACCAACGTTCTTCCTTCTCGCCTCTTCGTGGCCCATAATGCCAG
CACAAGTTGTCAGCACAATGTATCCATACTGTCTTGAGGGAAGCAACCTA
CCAGTCCAACCTACAATCTCCTTGACGCCAACATCAAAACGGGGACTGAT
AACCCCACATTTGTTCACTCTTCCGTTCAGTTCAACCACAATCTTACCAG
CTCTGTGGTCATCAACATACTCAGACTCACCAATGTACCCGTGCTTTTGC
ATCGCCAGAAGAAACTTAATGATAACCTTGGAGGATGGGCTGATCATAAC
CTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTCT
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