CF836005

Overview
NameCF836005
Unique NameCF836005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length284
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:23..306. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.415e-32
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV +SVLNDALKSMYNAEKRGKRQVMI PSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GKIVVELNGRLN CGV
Sbjct:    1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 9.937e-32
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV VSVLNDALKSM+NAEKRGKRQVMI PSSKV+IKFL+VMQKHGYIGEFEYVDDHR+GKIVVELNGRLN CGV
Sbjct:    1 MVRVSVLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 9.937e-32
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV +SVLNDALKSM+NAEKRGKRQVMI PSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GKIVVELNGRLN CGV
Sbjct:    1 MVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 9.937e-32
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV +SVLND LKSMYNAEKRGKRQVMI PSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GKIVVELNGRLN CGV
Sbjct:    1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.874e-29
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV  SVLND LKSM NAEK+GKRQVMI PSSKVIIKFL VMQKHGYI EFEYVDDHR+GKIVVELNGRLN CGV
Sbjct:    1 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNGRLNNCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS22_CANAL (40S ribosomal protein S22 OS=Candida albicans GN=RPS22A PE=3 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 3.657e-26
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            M   SVL DAL ++ NAEK GKRQV+I PSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLN CGV
Sbjct:    1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLTVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS22_NEUCR (40S ribosomal protein S22 OS=Neurospora crassa GN=rps-22 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.777e-26
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV  SVL+DAL S+ NAEK GKRQV+I PSSKVIIKFL VMQKHGYIGEFE VDDHR+GKIVV+LNGR+N CGV
Sbjct:    1 MVRTSVLHDALNSINNAEKAGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEEVDDHRSGKIVVQLNGRMNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS22_KLUMA (40S ribosomal protein S22 OS=Kluyveromyces marxianus GN=RPS22 PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.777e-26
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            M   SVL DAL ++ NAEK GKRQV+I PSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLN CGV
Sbjct:    1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS22_KLULA (40S ribosomal protein S22 OS=Kluyveromyces lactis GN=RPS22 PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.777e-26
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            M   SVL DAL ++ NAEK GKRQV+I PSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLN CGV
Sbjct:    1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS22A_YEAST (40S ribosomal protein S22-A OS=Saccharomyces cerevisiae GN=RPS22A PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.148e-26
Identity = 57/70 (81.43%), Postives = 63/70 (90.00%), Query Frame = 3
Query:   75 SVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            SVL DAL ++ NAEK GKRQV+I PSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLN CGV
Sbjct:    5 SVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGV 74          
The following BLAST results are available for this feature:
BLAST of CF836005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
R15A1_ARATH3.415e-3291.8940S ribosomal protein S15a-1 OS=Arabidopsis thalia... [more]
RS15A_DAUCA9.937e-3290.5440S ribosomal protein S15a OS=Daucus carota GN=RPS... [more]
RS15A_BRANA9.937e-3290.5440S ribosomal protein S15a OS=Brassica napus GN=RP... [more]
R15A4_ARATH9.937e-3290.5440S ribosomal protein S15a-4 OS=Arabidopsis thalia... [more]
R15A3_ARATH7.874e-2986.4940S ribosomal protein S15a-3 OS=Arabidopsis thalia... [more]
RS22_CANAL3.657e-2678.3840S ribosomal protein S22 OS=Candida albicans GN=R... [more]
RS22_NEUCR4.777e-2679.7340S ribosomal protein S22 OS=Neurospora crassa GN=... [more]
RS22_KLUMA4.777e-2678.3840S ribosomal protein S22 OS=Kluyveromyces marxian... [more]
RS22_KLULA4.777e-2678.3840S ribosomal protein S22 OS=Kluyveromyces lactis ... [more]
RS22A_YEAST8.148e-2681.4340S ribosomal protein S22-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836005 ID=CF836005; Name=CF836005; organism=Citrus sinensis; type=EST; length=284bp
CTTTTGCAGCTCACTTACTCTTTCAGAGGCGCCTCTCCCTGCTTTGATTT
GCCTTCGCAACAATGGTGATAGTTAGTGTTCTGAATGACGCTCTTAAGAG
CATGTATAATGCCGAGAAAAGGGGGAAGCGTCAGGTTATGATCTGACCAT
CCTCCAAGGTTATCATTAAGTTTCTTCTGGTGATGCAAAAGCACGGGTAC
ATTGGTGAGTTTGAGTATGTTGATGACCACAGAGCTGGTAAGATTGTGGT
TGAACTGAACGGAAGATTGAACTAATGTGGGGTT
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