CF836007

Overview
NameCF836007
Unique NameCF836007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1398 contig Csv1_Contig1398:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836007 vs. ExPASy Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 8.974e-65
Identity = 122/135 (90.37%), Postives = 127/135 (94.07%), Query Frame = 3
Query:   57 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 461
            MVKFLKPNKAVILLQGRYAG+KAVIVK+FDDGTRE+ YGHCLVAGIKK+P KVI+KDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKD V  D LQSKDKKVTA KETKK LEERFKTGKNRWFFTKLRF
Sbjct:    1 MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEERFKTGKNRWFFTKLRF 135          
BLAST of CF836007 vs. ExPASy Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.192e-62
Identity = 115/135 (85.19%), Postives = 124/135 (91.85%), Query Frame = 3
Query:   57 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 461
            MVKFLK NKAVILLQGRYAG+KAVI+KSFDDG R+R YGHCLVAG+KKYP KVIRKDSAKKTAKKSRVK F+KLVNYQHLMPTRYTLDVDLK+V + D+LQSKDKKV A KE K +LEERFKTGKNRWFFTKLRF
Sbjct:    1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135          
BLAST of CF836007 vs. ExPASy Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.192e-62
Identity = 115/135 (85.19%), Postives = 125/135 (92.59%), Query Frame = 3
Query:   57 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 461
            MVKFLK NKAVILLQGRYAG+KAVI+KSFDDGT +R YGHCLVAG+KKYP KVIRKDSAKKTAKKSRVK F+KLVNYQHLMPTRYTLDVDLK+V + D+L+SKDKKVTA KE K +LEERFKTGKNRWFFTKLRF
Sbjct:    1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135          
BLAST of CF836007 vs. ExPASy Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.483e-59
Identity = 110/135 (81.48%), Postives = 122/135 (90.37%), Query Frame = 3
Query:   57 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 461
            MVK +KP KAVILLQGRY G+KAVIVKSFDDGT E+ YGHCLVAG+KKYP KVIRKDSAKKTAKKSRVK F K++NYQH+MPTRYTLD+DLK+VVSAD++ SKDKKVTA KE K + EERFKTGKNRWFFTKLRF
Sbjct:    1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135          
BLAST of CF836007 vs. ExPASy Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.617e-56
Identity = 110/139 (79.14%), Postives = 122/139 (87.77%), Query Frame = 3
Query:   57 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL----KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 461
            M KFLKPNKAVILLQG+YAGRKAVIV++FD+GTR+R YGHCLVAGI +YP KVIRKDSAKK  KKSRVKAF+KLVNY H+MPTRYTLD DL    KDVV+AD LQ++DKKVTA + TK RL ERFKTGKNRWFFTKLRF
Sbjct:    1 MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKARLAERFKTGKNRWFFTKLRF 138          
BLAST of CF836007 vs. ExPASy Swiss-Prot
Match: RL27_PYRST (60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.298e-44
Identity = 88/135 (65.19%), Postives = 106/135 (78.52%), Query Frame = 3
Query:   57 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 461
            MVKFLK  K V++L GR+AG+KAVIV++FDDGT  R YGH LV G++K P KV ++ S KK AKKS +K F+K VNY HLMPTRYTLDVD K  V+A++ ++  KKV A KE KK LEE+FKTGKNRWFFTKLRF
Sbjct:    1 MVKFLKSGKVVVVLSGRFAGKKAVIVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFKG-VAAEAQENPTKKVEARKECKKLLEEKFKTGKNRWFFTKLRF 134          
BLAST of CF836007 vs. ExPASy Swiss-Prot
Match: RL27_HIPCM (60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 4.958e-39
Identity = 80/136 (58.82%), Postives = 99/136 (72.79%), Query Frame = 3
Query:   57 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 461
            M KF+KP K V++L GRYAGRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++KAFVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of CF836007 vs. ExPASy Swiss-Prot
Match: RL27_DANRE (60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 6.476e-39
Identity = 80/136 (58.82%), Postives = 99/136 (72.79%), Query Frame = 3
Query:   57 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 461
            M KF+KP K V++L GRYAGRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++KAFVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of CF836007 vs. ExPASy Swiss-Prot
Match: RL27_ICTPU (60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.443e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 3
Query:   57 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 461
            M KF+KP K V++L GRYAGRKAVIVK+ DDGT +R Y H LV+GI +YP KV      KK AK+S++KAFVK+ NY HLMPTRY++D+ L K +V+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of CF836007 vs. ExPASy Swiss-Prot
Match: RL27_RAT (60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.461e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 3
Query:   57 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 461
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
The following BLAST results are available for this feature:
BLAST of CF836007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_PEA8.974e-6590.3760S ribosomal protein L27 OS=Pisum sativum GN=RPL2... [more]
RL273_ARATH3.192e-6285.1960S ribosomal protein L27-3 OS=Arabidopsis thalian... [more]
RL272_ARATH3.192e-6285.1960S ribosomal protein L27-2 OS=Arabidopsis thalian... [more]
RL271_ARATH1.483e-5981.4860S ribosomal protein L27-1 OS=Arabidopsis thalian... [more]
RL27_SOLTU2.617e-5679.1460S ribosomal protein L27 OS=Solanum tuberosum GN=... [more]
RL27_PYRST2.298e-4465.1960S ribosomal protein L27 OS=Pyrobotrys stellata G... [more]
RL27_HIPCM4.958e-3958.8260S ribosomal protein L27 OS=Hippocampus comes GN=... [more]
RL27_DANRE6.476e-3958.8260S ribosomal protein L27 OS=Danio rerio GN=rpl27 ... [more]
RL27_ICTPU1.443e-3857.3560S ribosomal protein L27 OS=Ictalurus punctatus G... [more]
RL27_RAT2.461e-3857.3560S ribosomal protein L27 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836007 ID=CF836007; Name=CF836007; organism=Citrus sinensis; type=EST; length=660bp
GCACAACACACCAATACCCAGAGAGAGCCGCGGGTGCGCGAGGAGCGAGA
GTTGAAATGGTGAAGTTTCTGAAACCAAACAAGGCCGTGATCCTTCTTCA
GGGCCGTTACGCCGGCCGGAAGGCGGTGATCGTGAAGTCGTTCGACGACG
GGACCCGCGAGAGGGCGTACGGGCACTGTTTGGTAGCGGGGATAAAGAAG
TACCCGGGCAAGGTCATCCGCAAGGACTCGGCGAAGAAGACAGCGAAGAA
GTCACGCGTCAAGGCCTTCGTCAAGTTGGTCAACTACCAGCACCTGATGC
CCACGCGCTACACTCTCGACGTCGATTTGAAGGACGTCGTGTCGGCCGAT
TCCCTCCAGAGCAAGGACAAGAAGGTGACCGCTTGCAAGGAGACCAAGAA
GCGCCTCGAGGAGAGGTTTAAGACTGGCAAGAATCGTTGGTTCTTTACTA
AGCTCAGGTTTTAGATTTTTAACCAAAGGAAGAAAACGACTTGTGTTTTT
GTTTTGTTTTATTTTGTGTTATTGAAAACGCTTTAGTTGTTAAAGTGCGA
ATTTTGAGATTTATGTAGTTTTTTGTGAACTTAATTTTATTTCTGGATCT
GGTACTATTTTTATGTGATAATATTGGGTTTATAATGTTTACTCAAAAAA
AAAAAAAAAA
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