CF836012

Overview
NameCF836012
Unique NameCF836012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8816 contig Csv1_Contig8816:93..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF836012 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.668e-13
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = -2 
Query:  603 LRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 776
            LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:   91 LRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CF836012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.668e-1356.90Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02E11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836012 ID=CF836012; Name=CF836012; organism=Citrus sinensis; type=EST; length=783bp
TTTTTTTTTTTTTTTTTAGTTCGAACACTGGGACAAGACTTTCTTAAACA
GCAAACATAACTGTACATTGGACAAGACTGGATAAAAGGTTAATTTGAAA
GCAAACACCTAAGAAACTTGAAAGGAGCTATAGCTACAAAGAAAGCTGGG
TGCTACATTTCTCACAAGCATACACTATTTCCATTCCAGTTGATGATTTT
TTGCTACACTCATTTTGTTATTCACATGGACCCTCTTGCAGCTTGCATCC
CCACAAACTTTTTTTCCCCCAAACCGCGGATTTTTAACTGTTGGCTAATA
TCTCAAGTGGAGAAGAAAGATCTTCTAACCTTCTACTCTGTGGCTGCAAA
AACTGCTGGCCCTTCCACCTTAAATGTAGCACCCCAGATCTCTTCTTCCG
CAGCAGGAACCGCAGGGATCTTGTTCTTTGGATTCTCAAAGCTTCTCAGT
CCTCCAACTGCTGTTGAGAAGAAACAACCTTGAGGGAAAGAAGCAAGTGA
CTTGCCGCAAGCACCTTTGAGCAAGTCAGCATCATCAGCAAAGGCAACAT
GTCCATCAGCAGTGATTCCCCAATAAAGAGGAACCTTACCAAATTGGTCA
GAAGCCACAAACAAGGTGGAGGTGGACTTGTCGTAGACAATGAAGGCAAA
GTACCCACTAAGGTGGCCAACGACATGGTTCGGTGGGTAAGGGGCCCGAT
CACGCAGAGCCTTGTATGCCTCAATCACCAAGATCACTTCATTTGCCGAC
TTAGCTAGTCCATATTGCTGCCTCAGGCTTCCC
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