CF836013

Overview
NameCF836013
Unique NameCF836013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8219 contig Csv1_Contig8219:28..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF836013 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.914e-29
Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 2 
Query:  113 MLGVFSSAIVSPPEELVA--AGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 553
            ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CF836013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC9.914e-2943.62Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02E11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836013 ID=CF836013; Name=CF836013; organism=Citrus sinensis; type=EST; length=743bp
TTTGAACTTTCCCTTTAAAGCCAAAGAGTTCCGAACGGATCAAAGTTTTC
TTGTAGGAGAGAGAAATTTCTAGGGCGAGAAAGCGAGAGAAAAGGAAATT
TGGTAGCTTAAAATGTTGGGAGTGTTCAGCAGCGCGATCGTTTCACCTCC
AGAGGAGCTGGTGGCGGCCGGAAGCCGGACTCCGTCGCCGAAGACCACAT
CGACGGCACTGGTCGACCGTTTCCTCCAGACCAACTCGTCTGCTGTGTCC
GTACAGGTCGGGGACAACGTCACCCTCGCGTACACTCATCAGAACGAGTC
TCCTTTACGGCAAAGATCATTTGCTGTGAAAGATGAGATCTTTTGCTTGT
TTGAGGGAGCACTTGATAACTTGGGAAGCCTGAGGCAGCAATATGGACTA
GCTAAGTCGGCAAATGAAGTGATCTTGGTGATTGAGGCATACAAGGCTCT
GCGTGATCGGGCCCCTTACCCACCGAACCATGTCGTTGGCCACCTTAGTG
GGTACTTTGCCTTCATTGTCTACGACAAGTCCACCTCCACCTTGTTTGTG
GCTTCTGACCAATTTGGTAAGGTTCCTCTTTATTGGGGAATCACTGCTGA
TGGACATGTTGCCTTTGCTGATGATGCTGACTTGCTCAAAGGTGCTTGCG
GCAAGTCACTTGCTTCTTTCCCTCAAGGTTGTTTCTTCTCAACAGCAGTT
GGAGGACTGAGAAGCTTTGAGAATCCAAAGAACAAGATCACTG
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