CF836035

Overview
NameCF836035
Unique NameCF836035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8610 contig Csv1_Contig8610:568..1369. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836035 vs. ExPASy Swiss-Prot
Match: NUD17_ARATH (Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.187e-48
Identity = 96/167 (57.49%), Postives = 124/167 (74.25%), Query Frame = -1
Query:  302 RHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSL 802
            R  QRY KGRRQVVGC+PYR+K       I++E +EVLVISSQKG  ++FPKGGWE+DES++EAA RE +EEAGV G VE +L G+W+F S++  T Y+G MFP+LV +QL  WPE++VR R WM+V EAR+ C+ WWMKEALD LV RL+S     KE+   + S+
Sbjct:   15 RQFQRYNKGRRQVVGCVPYRFKLSNDG-KISDE-VEVLVISSQKGHALMFPKGGWELDESVEEAASRECLEEAGVLGNVEHQL-GKWDFLSKSRGTYYEGLMFPMLVTEQLELWPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSPMNQPKEEKTMSISI 178          
BLAST of CF836035 vs. ExPASy Swiss-Prot
Match: NUD18_ARATH (Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.200e-46
Identity = 93/160 (58.13%), Postives = 120/160 (75.00%), Query Frame = -1
Query:  323 RHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKED 802
            R  QRY KGRRQVVGCIPYR K +     I++E  EVLVISSQKG  ++FPKGGWE+DES++EAA RE++EEAGV G VE +L G+W+F S++  T Y+G+MFP+LV+++L  WPE+++R R WM V EAR  C+ WWMKEALD LV RL+   L   E+
Sbjct:   10 RQSQRYNKGRRQVVGCIPYRLK-ISSDGTISDE-FEVLVISSQKGHALMFPKGGWELDESVEEAASRESLEEAGVVGNVERQL-GKWDFLSKSKGTFYEGFMFPMLVKEELELWPEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQRLSLLSLKPMEE 166          
BLAST of CF836035 vs. ExPASy Swiss-Prot
Match: NUDT4_ARATH (Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.327e-45
Identity = 88/149 (59.06%), Postives = 116/149 (77.85%), Query Frame = -1
Query:  362 RHLQRYQK-GRRQVVGCIPYRYKCVKQSLD-INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 802
            R LQRY   G RQVVGC+PYRYK  KQ ++ +  + ++VL++S+QKGKGMLFPKGGWE DES++EAALRETIEEAGVTG +E E LG+W +KS+ H+  + GYMF LLV  +   WPE  +R R+W+S+ EAR+VCQ+WWM+EAL+  +
Sbjct:   49 RDLQRYDHAGYRQVVGCVPYRYK--KQEVNGVETQVIQVLLVSAQKGKGMLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYKSKRHSIIHDGYMFALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALEAFI 194          
BLAST of CF836035 vs. ExPASy Swiss-Prot
Match: NUD21_ARATH (Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.217e-42
Identity = 90/156 (57.69%), Postives = 111/156 (71.15%), Query Frame = -1
Query:  341 RHLQRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ 802
            R LQRY   G RQVVGC+PYRYK           ++EVL+IS+QK GKGML PKGGWEIDESI+EAALRETIEEAGVTG +E E LG+W +KS+ H   + G+MFPLLV  Q   WPE   R RKW+S++EA ++CQ+ WM+EAL+  + R    Q
Sbjct:   50 RDLQRYNTAGYRQVVGCVPYRYK------KHGGGEIEVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLE-ESLGKWQYKSKRHTMIHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALEAFINRKCQTQ 198          
BLAST of CF836035 vs. ExPASy Swiss-Prot
Match: NUD16_ARATH (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.919e-34
Identity = 72/149 (48.32%), Postives = 101/149 (67.79%), Query Frame = -1
Query:  374 QRYQKGRRQVVGCIPYRYKCVKQSLDINEED---LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY------QGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 793
            QRY+ G R V GCIP+RY  V    D N E    ++VL+ISS  G G+LFPKGGWE DE+++EAA RE +EEAGV GI+  + LG + FKS++H  ++      +  M+ L V+++LA WPE   R+RKW+++ EA + C+H WMK+AL
Sbjct:   13 QRYEDGSRLVAGCIPFRY--VNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFKSKSHQDEFSPEGLCKAAMYALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDAL 158          
BLAST of CF836035 vs. ExPASy Swiss-Prot
Match: NUD13_ARATH (Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.090e-31
Identity = 76/180 (42.22%), Postives = 115/180 (63.89%), Query Frame = -1
Query:  299 RHLQRYQKGRRQVVGCIPYRYKCVKQ----SLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD--------YQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSLS 802
            R  QRY    R V GCIPYR    ++    S+D  E  L+VL+ISS     ++FPKGGWE DE++ EAA RE +EEAGV GI+  + LG W F+S++ + +         +GYMF L V+++LA WPE++ R R+W++V EA ++C++ WM+ AL+   +R+ +++   KEDS+   S+S
Sbjct:   10 RDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDF-ENKLQVLMISSPNRHDLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEF-LRVMAEEGSTKEDSLAISSIS 187          
BLAST of CF836035 vs. ExPASy Swiss-Prot
Match: NUD12_ARATH (Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.813e-30
Identity = 73/177 (41.24%), Postives = 105/177 (59.32%), Query Frame = -1
Query:  317 RHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED--------LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD------YQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ-QLHGKEDSV 802
            R  QRY    R V GCIPYR        D  EED        LEVL++SS     ++FPKGGWE DE++ EAA RE IEEAGV GI+    LG W F+S++   +       +GYMF L V ++L +WPE+  R R+W++V EA ++C++ WM+ AL+  +  +  + +L  +E++V
Sbjct:   10 RDRQRYDNNFRLVSGCIPYRL----MKADETEEDSGVDFVNKLEVLMVSSPNRHDLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKGYMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFLRVMEDERRLRTEEETV 182          
The following BLAST results are available for this feature:
BLAST of CF836035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NUD17_ARATH2.187e-4857.49Nudix hydrolase 17, mitochondrial OS=Arabidopsis t... [more]
NUD18_ARATH1.200e-4658.13Nudix hydrolase 18, mitochondrial OS=Arabidopsis t... [more]
NUDT4_ARATH1.327e-4559.06Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4... [more]
NUD21_ARATH5.217e-4257.69Nudix hydrolase 21, chloroplastic OS=Arabidopsis t... [more]
NUD16_ARATH8.919e-3448.32Nudix hydrolase 16, mitochondrial OS=Arabidopsis t... [more]
NUD13_ARATH1.090e-3142.22Nudix hydrolase 13, mitochondrial OS=Arabidopsis t... [more]
NUD12_ARATH7.813e-3041.24Nudix hydrolase 12, mitochondrial OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02F01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836035 ID=CF836035; Name=CF836035; organism=Citrus sinensis; type=EST; length=802bp
TTTTTTTTTTTTTTTTTCGCAAATCAGAACCTCATCATTCTCCATTAAAA
GAACCAATGTTTGTTCTAAACATTGTCAACAACCTTGGGCTAACCTTTCC
TATTTTCCCACACAGAAGTTTCTGAATTAAAATACCAAGCAAATGAAACA
ACAATTAAAAATGCAGACTTCCGTTATCTGTATCCTTCAGTGTTGTCACT
GTTTCTTGTTCGCTTGGATCTGTACTTCTTGGGGTCTTAGAGCAACTTCC
CTCTGGTCTTCGAAAATTTTCTATGTACAAGTGGGATTTTCTATTCTAGC
TCAAAGAACAGGTTCCTACAGAATCTTCCTTGCCATGTAGTTGTTGAGAA
GTTAGACGCATTACTAGTCTATCCAATGCTTCCTTCATCCACCAATGCTG
ACAAACTTTTCTAGCTTCTGCCACGCTCATCCATTTTCTGCTTCGCACAT
TCTTCTCTGGCCACTCCGCTAATTGATCCTGAACAAGTAATGGGAACATG
TATCCTTGATAGTCAGTGTTGTGTGCTCTGCTCTTGAAATTCCATTCACC
CAATAATTCACACTCAACGATGCCAGTTACCCCGGCTTCCTCGATGGTTT
CTCGTAAAGCTGCTTCTTGTATGGATTCATCAATTTCCCAGCCTCCCTTT
GGGAACAACATCCCTTTGCCTTTCTGTGAACTGATGACGAGAACTTCAAG
ATCCTCCTCATTAATATCCAAGCTTTGTTTTACGCATTTATATCTATATG
GTATGCATCCAACAACTTGGCGACGGCCTTTTTGGTAACGCTGCAAATGC
CT
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